Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4714_RS03345 Genome accession   NZ_CP137099
Coordinates   641638..642348 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain 20824-4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 636638..647348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS03330 - 637179..637427 (-) 249 WP_000364990.1 YneF family protein -
  R4714_RS03335 treC 637683..639308 (-) 1626 WP_061647433.1 alpha,alpha-phosphotrehalase -
  R4714_RS03340 treP 639486..641453 (-) 1968 WP_061647434.1 PTS system trehalose-specific EIIBC component -
  R4714_RS03345 treR 641638..642348 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4714_RS03350 - 642504..643780 (+) 1277 WP_398579129.1 ISL3 family transposase -
  R4714_RS03355 - 643905..644831 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  R4714_RS03360 amiE 644842..645909 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R4714_RS03365 amiD 645918..646844 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=818293 R4714_RS03345 WP_000760673.1 641638..642348(+) (treR) [Streptococcus pneumoniae strain 20824-4]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=818293 R4714_RS03345 WP_000760673.1 641638..642348(+) (treR) [Streptococcus pneumoniae strain 20824-4]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593