Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R4714_RS00250 Genome accession   NZ_CP137099
Coordinates   47279..47743 (-) Length   154 a.a.
NCBI ID   WP_001135785.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20824-4     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42279..52743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS00230 - 43230..44198 (-) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R4714_RS00235 pdrM 44352..45713 (-) 1362 WP_000278539.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R4714_RS00240 - 45724..45984 (-) 261 WP_001105925.1 hypothetical protein -
  R4714_RS00245 - 45998..47266 (-) 1269 WP_000924482.1 dihydroorotase -
  R4714_RS00250 mutX 47279..47743 (-) 465 WP_001135785.1 8-oxo-dGTP diphosphatase Machinery gene
  R4714_RS00255 - 47753..48406 (-) 654 WP_000401328.1 uracil-DNA glycosylase -
  R4714_RS00260 - 48542..49144 (-) 603 WP_001810555.1 hypothetical protein -
  R4714_RS00265 - 49202..49915 (-) 714 WP_000499431.1 YjjG family noncanonical pyrimidine nucleotidase -
  R4714_RS00270 dhaM 50374..50754 (-) 381 WP_000443784.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  R4714_RS00275 - 50754..50828 (-) 75 Protein_54 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17884.33 Da        Isoelectric Point: 4.2350

>NTDB_id=818267 R4714_RS00250 WP_001135785.1 47279..47743(-) (mutX) [Streptococcus pneumoniae strain 20824-4]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAVREILEETGLKAKPVLKGVITFPEFTPELD
WYTYVFKVTEFEGDLIDCNEGMLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=818267 R4714_RS00250 WP_001135785.1 47279..47743(-) (mutX) [Streptococcus pneumoniae strain 20824-4]
ATGCCTCAGTTAGCGACGATTTGTTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGTACGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGAATTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGATGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

99.351

100

0.994