Detailed information NTG0818207

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: R4535_RS02815
• Genome accession: NZ_CP137091
• Coordinates: 592946..595519 (+)
• Length: 857 a.a.
• NCBI ID: WP_001235059.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain DL4211
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 587946..600519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4535_RS02790 (R4535_02785)	pheA	588099..589274 (-)	1176	WP_000130287.1	prephenate dehydratase	-
R4535_RS02795 (R4535_02790)	hpf	589514..589840 (-)	327	WP_000700176.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
R4535_RS02800 (R4535_02795)	comL	590242..590967 (-)	726	WP_000877197.1	outer membrane protein assembly factor BamD	Machinery gene
R4535_RS02805 (R4535_02800)	rluD	591122..592096 (+)	975	WP_000941106.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
R4535_RS02810 (R4535_02805)	pgeF	592099..592821 (+)	723	WP_000602840.1	peptidoglycan editing factor PgeF	-
R4535_RS02815 (R4535_02810)	clpC	592946..595519 (+)	2574	WP_001235059.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95805.75 Da
• Isoelectric Point: 5.3031

>NTDB_id=818207 R4535_RS02815 WP_001235059.1 592946..595519(+) (clpC) [Vibrio cholerae strain DL4211]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLGEMLDRLPKVSGIGGD
VQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAALEDKGPLGTLLKEFGLTEKKVSDAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE
QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEAL
DLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVKEGNIFASQ

Nucleotide

• Length: 2574 bp

>NTDB_id=818207 R4535_RS02815 WP_001235059.1 592946..595519(+) (clpC) [Vibrio cholerae strain DL4211]
ATGCGTCTTGACAGATTTACGAGTAAATTTCAGATCGCGATTTCCGATGCCCAGTCATTAGCGCTCGGCCGTGATCATCA
ATATATCGAACCTGTGCACCTGATGGTGGCTCTGCTGGATCAAAACGGCAGCCCGATCCGCCCATTACTCACCATGCTTA
ATGTGGATGTGATGCAACTGCGCTCCAAACTTGGCGAAATGCTCGATCGTTTACCCAAAGTCAGTGGTATTGGTGGTGAT
GTACAGCTCTCTTCGGCGCTTGGCTCGCTGTTTAATCTGTGTGATAAGGTTGCGCAAAAGCGTCAAGATGCCTACATCTC
CTCTGAAATTTATCTCCTCGCCGCTTTGGAAGATAAAGGTCCACTTGGAACCTTGCTCAAAGAGTTCGGGCTGACCGAGA
AAAAAGTCTCTGATGCAATTGAAAAAATTCGTGGAGGCCAGAAGGTCAATGACCCGAATGCGGAAGAGCTGCGTCAAGCG
TTGGAAAAATTCACCATCGATCTCACTGAGCGCGCTGAGCAGGGCAAACTCGATCCTGTGATCGGTCGTGATGATGAAAT
TCGCCGCACCATTCAAGTGCTGCAGCGTCGTACCAAAAACAACCCAGTGATCATCGGTGAACCCGGTGTGGGTAAAACTG
CGATTGTGGAAGGCTTGGCGCAGCGCATCATTAATAATGAAGTACCAGAAGGCCTGCGTGGACGCCGCGTATTGTCTTTA
GATATGGGCGCGCTGGTGGCTGGGGCGAAATACCGCGGCGAATTTGAAGAGCGCTTGAAATCAGTACTCAATGAGCTAGC
GAAAGAAGAAGGCAATATCATCCTCTTCATTGATGAGCTGCACACCATGGTTGGTGCGGGGAAAGGCGAAGGCTCGATGG
ATGCCGGCAACATGCTCAAACCCGCTTTGGCGCGTGGAGAATTGCACTGTGTCGGCGCAACCACTTTAGATGAGTACCGC
CAATACATCGAAAAAGATCCCGCGCTAGAGCGCCGCTTCCAAAAAGTGTTGGTGGATGAGCCCACGGTGGAAGATACCAT
CGCCATCTTGCGTGGGTTGAAAGAGCGTTATGAGCTGCATCACCATGTCGAAATCACAGATCCAGCGATTGTGGCGGCAG
CGAGCCTATCGCATCGCTATATTTCCGATCGCCAATTACCCGATAAAGCGATCGATTTGATCGATGAGGCCGCTTCAAGC
ATCCGGATGCAGATTGACTCCAAACCGGAAGCTCTGGATAAGCTTGAGCGCAAAATCATCCAACTGAAAATCGAGCAGCA
AGCACTCTCTAATGAGCACGATGAAGCCAGTGAAAAACGCTTGGCGATCTTAAATGAAGAGCTGCAAGAGAAAGAGCGCG
ATTACGCAGAGTTGGAAGAAGTGTGGAAAGCTGAAAAGGCGGCACTCTCTGGCACGCAACATATTAAAGCGGCACTTGAA
CAAGCGCGGATGGATCTGGAAGTCGCTCGTCGTGCGGGGGATTTGAACCGCATGTCAGAGCTGCAATATGGTCGCATTCC
GGAGCTAGAAAAGCAGCTCGATCTAGCCGCGCAAGCCGAAATGCAGGAAATGACTCTGCTGCGTAATAAAGTGACGGATG
CAGAAATTGCCGAAGTGCTTTCAAAACAGACTGGTATTCCGGTATCAAAAATGCTCGAAGCCGAGAAAGAAAAGTTGCTG
CGCATGGAAGAAGTGCTGCATAAACGCGTGATTGGCCAAAAAGAAGCGGTGGAAGTGGTCGCGAATGCGATTCGCCGCAG
TCGCGCAGGGCTTTCTGATCCGAATCGTCCGATTGGCTCCTTCTTATTCTTGGGGCCAACAGGGGTCGGTAAAACCGAGC
TGTGTAAAACCTTGGCCAATTTCCTGTTTGACAGTGAAGATGCCATGGTACGTGTAGATATGTCGGAATTTATGGAGAAA
CACTCGGTTGCTCGTTTAGTCGGTGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGTGGCTACTTAACGGAAGCGGTGCG
CCGTAAACCTTACTCGGTGATTTTGCTCGATGAAGTGGAAAAGGCACACCCGGATGTCTTCAATATTCTGTTGCAAGTCT
TGGATGATGGCCGCTTGACGGACGGACAAGGGCGCACGGTCGATTTTCGAAATACCGTGGTGATCATGACCTCCAACTTG
GGTTCAAGCCGTATCCAAGAAAATTTTGCAAGGTTGGATTATCAAGGTATCAAAGAACAAGTGATGGACGTAGTCAGCAA
ACACTTCCGTCCTGAGTTCTTGAACCGAGTGGATGAAAGTGTGGTATTCCACCCATTAGGACAAGAGCATATTAAGTCGA
TCGCCTCTATTCAGTTGGCTCGCCTACGTCAGCGTTTGGCAGAGCGAGACTACCAACTAGAGGTAGATGATGAGGCGCTG
GATCTGATTGCTCATGTCGGCTTCGATCCGGTTTATGGTGCTCGTCCACTGAAACGCGCGATTCAACAAAATGTGGAAAA
CCCACTGGCCAAATCGATTCTGGCTGGTAAGTTCCTGCCTGGTTCACCTATTTTACTATCGGTAAAAGAGGGGAATATTT
TCGCAAGCCAGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA lid domain (AAA_lid_9) (342-442)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-843)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.338	100	0.477
clpC	Lactococcus lactis subsp. cremoris KW2	47.186	80.863	0.382