Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   R4535_RS00305 Genome accession   NZ_CP137091
Coordinates   63652..65487 (+) Length   611 a.a.
NCBI ID   WP_001918120.1    Uniprot ID   -
Organism   Vibrio cholerae strain DL4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58652..70487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS00285 (R4535_00285) - 58952..59620 (-) 669 WP_001004610.1 LysE family translocator -
  R4535_RS00290 (R4535_00290) - 59695..60498 (-) 804 WP_175597475.1 AraC family transcriptional regulator -
  R4535_RS00295 (R4535_00295) ggt 60655..62409 (-) 1755 WP_175597476.1 gamma-glutamyltransferase -
  R4535_RS00300 (R4535_00300) rarD 62583..63425 (-) 843 WP_001934564.1 EamA family transporter RarD -
  R4535_RS00305 (R4535_00305) recQ 63652..65487 (+) 1836 WP_001918120.1 ATP-dependent DNA helicase RecQ Machinery gene
  R4535_RS00310 (R4535_00310) - 65525..65791 (+) 267 WP_244662838.1 DUF3630 family protein -
  R4535_RS00315 (R4535_00315) - 65812..66660 (-) 849 WP_057556047.1 MurR/RpiR family transcriptional regulator -
  R4535_RS00320 (R4535_00320) murQ 66891..67793 (+) 903 WP_001913813.1 N-acetylmuramic acid 6-phosphate etherase -
  R4535_RS00325 (R4535_00325) murP 67817..69262 (+) 1446 WP_057556041.1 PTS N-acetylmuramic acid transporter subunit IIBC -
  R4535_RS00330 (R4535_00330) - 69425..70480 (+) 1056 WP_057556039.1 porin -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69128.42 Da        Isoelectric Point: 7.1164

>NTDB_id=818186 R4535_RS00305 WP_001918120.1 63652..65487(+) (recQ) [Vibrio cholerae strain DL4211]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=818186 R4535_RS00305 WP_001918120.1 63652..65487(+) (recQ) [Vibrio cholerae strain DL4211]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGCCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACGCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGATCGCC
CGAATATTCGCTACATGCTGGTGGAAAAACACAAGCCGGTTTCGCAAGTGATCCGCTATTTGGAAACTCAGCGCGGGCAG
TGCGGCATCATTTATTGTGGTAGCCGTAAAAAAGTGGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGAATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGACGGCCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCTGA
CATGAACTGGCTGCGCCGCATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAACTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGCGATAAGCCGTGT
GGCAACTGCGATATCTGCCTCGATCCACCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCGCTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATCGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCCTTGCTGCGCGG
AGAAATGAATATTGAGCTGGCGGTGCCGCGTTTAGATACCGCGGCGCGCGCCGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394