Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R3L04_RS13515 Genome accession   NZ_CP137075
Coordinates   2790405..2791040 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2785405..2796040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS13490 (R3L04_13495) - 2785461..2786441 (-) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  R3L04_RS13495 (R3L04_13500) kdsB 2786453..2787214 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R3L04_RS13500 (R3L04_13505) lpxK 2787224..2788234 (-) 1011 WP_000050457.1 tetraacyldisaccharide 4'-kinase -
  R3L04_RS13505 (R3L04_13510) msbA 2788237..2789964 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  R3L04_RS13510 (R3L04_13515) - 2789961..2790389 (-) 429 WP_000669683.1 biopolymer transporter ExbD -
  R3L04_RS13515 (R3L04_13520) exbB 2790405..2791040 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R3L04_RS13520 (R3L04_13525) - 2791090..2791977 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  R3L04_RS13525 (R3L04_13530) - 2791974..2792756 (-) 783 WP_000057212.1 ParA family protein -
  R3L04_RS13530 (R3L04_13535) rsmG 2792778..2793410 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  R3L04_RS13535 (R3L04_13540) murU 2793498..2794187 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  R3L04_RS13540 (R3L04_13545) - 2794187..2795200 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=818170 R3L04_RS13515 WP_000264035.1 2790405..2791040(-) (exbB) [Acinetobacter baumannii strain SNUBHAB0006]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=818170 R3L04_RS13515 WP_000264035.1 2790405..2791040(-) (exbB) [Acinetobacter baumannii strain SNUBHAB0006]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393