Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FJI53_RS14815 Genome accession   NZ_AP023237
Coordinates   3065420..3066049 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain F070     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3060420..3071049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJI53_RS14800 helD 3060662..3062716 (-) 2055 WP_000420536.1 DNA helicase IV -
  FJI53_RS14805 yccF 3062839..3063285 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FJI53_RS14810 yccS 3063295..3065457 (+) 2163 WP_000875023.1 YccS family putative transporter -
  FJI53_RS14815 sxy/tfoX 3065420..3066049 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FJI53_RS14820 sulA 3066268..3066777 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FJI53_RS14825 ompA 3067134..3068186 (+) 1053 WP_001361736.1 porin OmpA -
  FJI53_RS14830 matP 3068262..3068714 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FJI53_RS14835 ycbZ 3068900..3070660 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81811 FJI53_RS14815 WP_000839153.1 3065420..3066049(-) (sxy/tfoX) [Escherichia coli strain F070]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81811 FJI53_RS14815 WP_000839153.1 3065420..3066049(-) (sxy/tfoX) [Escherichia coli strain F070]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment