Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QEP67_RS27700 Genome accession   NZ_CP123058
Coordinates   5349149..5349433 (+) Length   94 a.a.
NCBI ID   WP_000843039.1    Uniprot ID   A0A0G8F3L7
Organism   Bacillus cereus group sp. MS39     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5344149..5354433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS27685 (QEP67_27590) rnmV 5344959..5345516 (-) 558 WP_000692830.1 ribonuclease M5 -
  QEP67_RS27690 (QEP67_27595) - 5345711..5346478 (-) 768 WP_000895837.1 TatD family hydrolase -
  QEP67_RS27695 (QEP67_27600) metG 5346645..5348627 (-) 1983 WP_000134154.1 methionine--tRNA ligase -
  QEP67_RS27700 (QEP67_27605) abrB 5349149..5349433 (+) 285 WP_000843039.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QEP67_RS27705 (QEP67_27610) rsmI 5349454..5350329 (-) 876 WP_000267813.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QEP67_RS27710 (QEP67_27615) - 5350298..5350588 (-) 291 WP_000414343.1 GIY-YIG nuclease family protein -
  QEP67_RS27715 (QEP67_27620) - 5350575..5351315 (-) 741 WP_001055376.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QEP67_RS27720 (QEP67_27625) yabA 5351437..5351790 (-) 354 WP_000412057.1 DNA replication initiation control protein YabA -
  QEP67_RS27725 (QEP67_27630) - 5351805..5352632 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  QEP67_RS27730 (QEP67_27635) holB 5352638..5353621 (-) 984 WP_000169566.1 DNA polymerase III subunit delta' -
  QEP67_RS27735 (QEP67_27640) tmk 5353657..5354283 (-) 627 WP_000677225.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10518.23 Da        Isoelectric Point: 4.9229

>NTDB_id=818065 QEP67_RS27700 WP_000843039.1 5349149..5349433(+) (abrB) [Bacillus cereus group sp. MS39]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
RILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=818065 QEP67_RS27700 WP_000843039.1 5349149..5349433(+) (abrB) [Bacillus cereus group sp. MS39]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CGAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8F3L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84