Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QEP67_RS27390 Genome accession   NZ_CP123058
Coordinates   5290909..5292285 (-) Length   458 a.a.
NCBI ID   WP_001085204.1    Uniprot ID   A0A0J7D6B4
Organism   Bacillus cereus group sp. MS39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5285909..5297285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS27370 (QEP67_27275) ispF 5287279..5287755 (-) 477 WP_353706480.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QEP67_RS27375 (QEP67_27280) ispD 5287871..5288551 (-) 681 WP_000288297.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QEP67_RS27380 (QEP67_27285) - 5288568..5289671 (-) 1104 WP_000919686.1 PIN/TRAM domain-containing protein -
  QEP67_RS27385 (QEP67_27290) disA 5289832..5290905 (-) 1074 WP_000392165.1 DNA integrity scanning diadenylate cyclase DisA -
  QEP67_RS27390 (QEP67_27295) radA 5290909..5292285 (-) 1377 WP_001085204.1 DNA repair protein RadA Machinery gene
  QEP67_RS27395 (QEP67_27300) clpC 5292382..5294817 (-) 2436 WP_000971181.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QEP67_RS27400 (QEP67_27305) - 5294840..5295904 (-) 1065 WP_000050823.1 protein arginine kinase -
  QEP67_RS27405 (QEP67_27310) - 5295909..5296457 (-) 549 WP_000128406.1 UvrB/UvrC motif-containing protein -
  QEP67_RS27410 (QEP67_27315) ctsR 5296631..5297092 (-) 462 WP_001244556.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49884.59 Da        Isoelectric Point: 7.4250

>NTDB_id=818063 QEP67_RS27390 WP_001085204.1 5290909..5292285(-) (radA) [Bacillus cereus group sp. MS39]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTTPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=818063 QEP67_RS27390 WP_001085204.1 5290909..5292285(-) (radA) [Bacillus cereus group sp. MS39]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAGTCACCAAAATATATGGGGAAATGCCCTGGTTG
TGGTCAATGGAATACGCTTGTTGAAGAGATGGAACCGGTTGTATCATCAAGACGCCTTAATTATGCCAATGCAATTCAAT
CGGAAGTAACAAAACCAAGACGCCTAACAGAAGTAGAAACAAAATCTGAGGCACGTATTGAAACAAAATTCCAAGAGTTT
AACCGTGTACTTGGTGGTGGGATTGTAGATGGATCCTTAGTACTTATTGGTGGAGATCCTGGGATTGGGAAATCAACATT
GTTATTACAAATTTCATCGCAATTAGCAGATTCTTCATATGATGTACTATACATATCAGGTGAGGAGTCAGCAAAGCAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGTAATCTATTTGTTGTAGCAGAAACGGATCTACAGCGAATTGCA
GCGCACATTGAAGAGATGAATCCAGCTTTTGTTGTTATTGACTCTATTCAAACGATACATTTACCTGAAGTGACGTCAGC
CCCAGGAAGTGTAGCGCAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAAACGAAAGGAATTCCTATTTTTA
TCGTCGGACATGTAACAAAAGAGGGGGCAATTGCAGGACCTCGTATGTTAGAACATATGGTCGATGCAGTTCTTTACTTT
GAAGGAGATCGTCATCATACATATCGTATTTTGCGAGCTGTGAAGAATCGTTTTGGTTCCACGAATGAAATGGGTATTTT
TGAAATGAAAGAGCTTGGTCTTGCGGAAGTCTTAAACCCTTCTGAAATTTTTCTTGAGGAAAGACCCGTTGGAGTCGCAG
GATCAACAGTAGTTGCCTCAATGGAAGGAACAAGACCAGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCGACGGGAATTGATCATAACCGTGTATCGCTTATTATGGCAGTGCTAGAAAAAAGAACAGG
TTTATTATTGCAAAACCAAGACGCATATTTAAAAGTAGCAGGTGGTTTGAAATTAGATGAACCAGCAATTGATTTAGCTG
TGGCTTTAAGTATTGCTTCAAGTTTTAGAGATAAACCTACGACACCAACTGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTCCAACGTGCTATTATTCC
TAGAAAAAATTTGGGGGGATGGACAATTCCGGATGGGATTGAGGTAGTAGGTGTATCTAATTTAGGGGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J7D6B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.728

100

0.749
  radA Streptococcus pneumoniae Rx1

64.238

98.908

0.635
  radA Streptococcus pneumoniae D39

64.238

98.908

0.635
  radA Streptococcus pneumoniae R6

64.238

98.908

0.635
  radA Streptococcus pneumoniae TIGR4

64.238

98.908

0.635
  radA Streptococcus mitis SK321

64.238

98.908

0.635
  radA Streptococcus mitis NCTC 12261

64.018

98.908

0.633