Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   QEP67_RS21995 Genome accession   NZ_CP123058
Coordinates   4240988..4243588 (-) Length   866 a.a.
NCBI ID   WP_353706429.1    Uniprot ID   A0AAU8F2N2
Organism   Bacillus cereus group sp. MS39     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 4235988..4248588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS21965 (QEP67_21890) fabF 4236311..4237549 (-) 1239 WP_000412644.1 beta-ketoacyl-ACP synthase II -
  QEP67_RS21970 (QEP67_21895) fabH 4237581..4238513 (-) 933 WP_001100551.1 beta-ketoacyl-ACP synthase III -
  QEP67_RS21975 (QEP67_21900) comZ 4238745..4238921 (-) 177 WP_001003337.1 ComZ family protein Regulator
  QEP67_RS21980 (QEP67_21905) - 4238975..4239847 (-) 873 WP_000486168.1 NAD(P)-dependent oxidoreductase -
  QEP67_RS21985 (QEP67_21910) - 4239877..4240611 (-) 735 WP_000028707.1 hydrolase -
  QEP67_RS21990 (QEP67_21915) - 4240768..4240950 (+) 183 WP_001211110.1 YjzD family protein -
  QEP67_RS21995 (QEP67_21920) clpC 4240988..4243588 (-) 2601 WP_353706429.1 ATP-dependent chaperone ClpB Regulator
  QEP67_RS22000 (QEP67_21925) - 4243787..4243966 (-) 180 WP_000531420.1 YjzC family protein -
  QEP67_RS22005 (QEP67_21930) - 4244459..4245268 (+) 810 WP_001041224.1 Cof-type HAD-IIB family hydrolase -
  QEP67_RS22010 (QEP67_21935) - 4245373..4245513 (+) 141 WP_000516816.1 hypothetical protein -
  QEP67_RS22015 (QEP67_21940) - 4245514..4245711 (+) 198 WP_000527398.1 DUF3813 domain-containing protein -
  QEP67_RS22020 (QEP67_21945) - 4245737..4246594 (-) 858 WP_000364451.1 YitT family protein -
  QEP67_RS22025 (QEP67_21950) - 4246695..4246826 (+) 132 WP_001120852.1 DUF3941 domain-containing protein -
  QEP67_RS22030 (QEP67_21955) prsA 4246957..4247814 (+) 858 WP_064449372.1 peptidylprolyl isomerase PrsA -
  QEP67_RS22035 (QEP67_21960) - 4247856..4248119 (-) 264 WP_064471077.1 hypothetical protein -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97518.58 Da        Isoelectric Point: 5.1949

>NTDB_id=818054 QEP67_RS21995 WP_353706429.1 4240988..4243588(-) (clpC) [Bacillus cereus group sp. MS39]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGVESLIKKKPSVTGSGAE
VGKLYITSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLLTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEADGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAREFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHIK

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=818054 QEP67_RS21995 WP_353706429.1 4240988..4243588(-) (clpC) [Bacillus cereus group sp. MS39]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTGCGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAGCAAGGCGTCGAAAGTTTAATTAAGAAAAAACCTTCTGTAACGGGAAGCGGTGCAGAA
GTAGGAAAATTATATATAACAAGTGCTCTGCAACAACTACTTGTAAGAGCAGGAAAAGAAGCAGAGAAATTGCAAGATGA
CTACATTTCAGTTGAACATGTATTGCTTGCTTTTTCAGAAGAAAAAGGCGATATAAATCAATTACTTACAAGATTTCACA
TTACAAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGTCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATTGATCCTGTTATCGGTCGCGA
TAGTGAAATTCGACGTGTAATCCGCATTCTTTCACGTAAAACGAAAAACAACCCGGTTTTAATTGGTGAACCCGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAGAAGGATGTACCAGAAGGATTAAAAGATAGAACAATC
TTCGCATTAGATATGAGTGCGCTTGTAGCTGGAGCGAAATTCCGTGGTGAGTTTGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGTCGCATTTTATTATTCATTGATGAACTTCACACAATCGTCGGCGCTGGTAAAACAGAAG
GTGCGATGGACGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACAACGTTAGAT
GAGTATCGTAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGCTTTGAAATTTATCATGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCCGTTTTATCAGATCGATATATTTCGGATCGTTTCTTACCAGATAAAGCGATTGATCTTGTTGACGAAGCG
TGCGCAACGATTCGAACAGAGATTGATTCTATGCCGACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAGAAGGACTTTGGTAGCCAAGAACGCCTGAAAACGTTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCATAAAGTGCGTGACTTACGTGAA
CATTTAGAGCGCTTGCGCCGTGAGTTAGAAGAAGCAGAAGGAAATTACGATTTAAATAAAGCAGCTGAACTTCGTCACGG
GAAAATTCCAGCTATCGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGTGCACATAATAAACAAGAGAATCGCTTATTAC
GTGAGGAAGTAAGTGAAGAAGAGATTGCTGATATTGTTTCACGCTGGACTGGTATTCCTGTCGCAAAACTCGTTGAAGGT
GAACGCGAGAAATTACTACGCTTAGAGCAAATTTTATCAGAGCGTGTCATCGGACAAGAGGAAGCGGTAAGCTTAGTATC
AGACGCAGTTCTTCGTGCACGCGCTGGTATTAAAGACCCGAACCGTCCAATTGGTTCCTTCATCTTTTTAGGACCGACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCACAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATCGACATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGGTATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCAGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCTCAAGGACGTACAGTAGACTTTAAAAACACGGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTGTTAGATGGATTAGAAGCAGATGGCTCAATTAAAGAGGAATCAAGAGA
ACTTGTAATGGGGCAATTAAGAGGACATTTCCGACCAGAGTTTTTAAACCGTGTCGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGGCGTTTAGCTGACCGTCATATTACA
GTAGAATTAACAGACGCAGCGAGAGAATTTGTTGTAGAAGCTGGCTTTGATCCGATGTACGGAGCTCGTCCATTAAAACG
ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGAACAATTACTGATAACAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATATAAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.657

100

0.482

  clpC Lactococcus lactis subsp. cremoris KW2

47.059

82.448

0.388