Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QEP67_RS21420 Genome accession   NZ_CP123058
Coordinates   4123409..4123732 (+) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus cereus group sp. MS39     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4118409..4128732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS21405 (QEP67_21330) - 4118926..4120293 (-) 1368 WP_064473101.1 aldehyde dehydrogenase -
  QEP67_RS21410 (QEP67_21335) inhA1 4120465..4122852 (-) 2388 WP_001035922.1 M6 family metalloprotease immune inhibitor InhA1 -
  QEP67_RS21415 (QEP67_21340) - 4123195..4123329 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  QEP67_RS21420 (QEP67_21345) sinR 4123409..4123732 (+) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  QEP67_RS21425 (QEP67_21350) calY 4123808..4124401 (-) 594 WP_000053728.1 biofilm matrix protein CalY -
  QEP67_RS21430 (QEP67_21355) - 4124704..4125540 (-) 837 WP_353706410.1 DUF4047 domain-containing protein -
  QEP67_RS21435 (QEP67_21360) - 4125675..4126262 (-) 588 WP_000172829.1 CalY family protein -
  QEP67_RS21440 (QEP67_21365) sipW 4126325..4126894 (-) 570 WP_033658782.1 signal peptidase I SipW -
  QEP67_RS21445 (QEP67_21370) - 4127097..4128383 (-) 1287 WP_000245998.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=818048 QEP67_RS21420 WP_000578882.1 4123409..4123732(+) (sinR) [Bacillus cereus group sp. MS39]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=818048 QEP67_RS21420 WP_000578882.1 4123409..4123732(+) (sinR) [Bacillus cereus group sp. MS39]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAGCTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGACACTCTACTTCATGATGAAACAACAAAGGAAAATCATTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692