Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QEP67_RS18030 Genome accession   NZ_CP123058
Coordinates   3441248..3441535 (-) Length   95 a.a.
NCBI ID   WP_000648283.1    Uniprot ID   A0A1G6PDZ3
Organism   Bacillus cereus group sp. MS39     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3436248..3446535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS18010 (QEP67_17945) - 3436679..3437614 (-) 936 WP_048566543.1 aldo/keto reductase -
  QEP67_RS18015 (QEP67_17950) - 3437722..3438030 (+) 309 WP_001259916.1 helix-turn-helix transcriptional regulator -
  QEP67_RS18020 (QEP67_17955) galT 3438314..3439806 (-) 1493 Protein_3568 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  QEP67_RS18025 (QEP67_17960) - 3440020..3440973 (-) 954 WP_001246218.1 serine protease -
  QEP67_RS18030 (QEP67_17965) abrB 3441248..3441535 (-) 288 WP_000648283.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QEP67_RS18035 (QEP67_17970) - 3441652..3443532 (-) 1881 WP_048566545.1 ABC transporter permease -
  QEP67_RS18040 (QEP67_17975) nadE 3443803..3444621 (+) 819 WP_000174908.1 ammonia-dependent NAD(+) synthetase -
  QEP67_RS18045 (QEP67_17980) - 3444669..3445130 (-) 462 WP_000035010.1 NUDIX hydrolase -
  QEP67_RS18050 (QEP67_17985) - 3445161..3445358 (-) 198 WP_001048106.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10590.37 Da        Isoelectric Point: 6.9795

>NTDB_id=818045 QEP67_RS18030 WP_000648283.1 3441248..3441535(-) (abrB) [Bacillus cereus group sp. MS39]
MKATGIIRKVDELGRIVIPKELREVLGIQIKSPLEIFVEADKVILQKYQPYNACQITGDVSDQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=818045 QEP67_RS18030 WP_000648283.1 3441248..3441535(-) (abrB) [Bacillus cereus group sp. MS39]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAGTTACGAGAAGTATTAGG
GATCCAAATCAAATCACCACTTGAAATTTTCGTAGAAGCAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G6PDZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.667

94.737

0.537