Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QEP67_RS06140 Genome accession   NZ_CP123058
Coordinates   1179780..1180823 (+) Length   347 a.a.
NCBI ID   WP_001013192.1    Uniprot ID   A0AAU8F9J6
Organism   Bacillus cereus group sp. MS39     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174780..1185823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS06105 (QEP67_06100) - 1174963..1175451 (+) 489 WP_000764276.1 hypothetical protein -
  QEP67_RS06110 (QEP67_06105) - 1175490..1175801 (-) 312 WP_353706544.1 hypothetical protein -
  QEP67_RS06115 (QEP67_06110) - 1176055..1176270 (+) 216 WP_001008334.1 DUF3912 family protein -
  QEP67_RS06120 (QEP67_06115) - 1176369..1176776 (+) 408 WP_064459833.1 hypothetical protein -
  QEP67_RS06125 (QEP67_06120) - 1177010..1178404 (-) 1395 WP_001094324.1 L-cystine transporter -
  QEP67_RS06130 (QEP67_06125) - 1178510..1178752 (-) 243 WP_000440719.1 DUF2626 domain-containing protein -
  QEP67_RS06135 (QEP67_06130) - 1178879..1179574 (-) 696 WP_000434122.1 helix-turn-helix domain-containing protein -
  QEP67_RS06140 (QEP67_06135) comGA 1179780..1180823 (+) 1044 WP_001013192.1 competence protein ComGA Machinery gene
  QEP67_RS06145 (QEP67_06140) comGB 1180816..1181847 (+) 1032 WP_353706545.1 competence type IV pilus assembly protein ComGB -
  QEP67_RS06150 (QEP67_06145) comGC 1181859..1182158 (+) 300 WP_001178692.1 competence type IV pilus major pilin ComGC -
  QEP67_RS06155 (QEP67_06150) comGD 1182155..1182610 (+) 456 WP_000810391.1 comG operon protein ComGD -
  QEP67_RS06160 (QEP67_06155) - 1182603..1182905 (+) 303 WP_000829516.1 hypothetical protein -
  QEP67_RS06165 (QEP67_06160) comGF 1182875..1183345 (+) 471 WP_048562311.1 competence type IV pilus minor pilin ComGF -
  QEP67_RS06170 (QEP67_06165) comGG 1183342..1183713 (+) 372 WP_001245749.1 competence type IV pilus minor pilin ComGG -
  QEP67_RS06175 (QEP67_06170) - 1183888..1184538 (+) 651 WP_000183841.1 2OG-Fe(II) oxygenase -
  QEP67_RS06180 (QEP67_06175) aroK 1184657..1185154 (+) 498 WP_000836634.1 shikimate kinase AroK -
  QEP67_RS06185 (QEP67_06180) - 1185193..1185393 (+) 201 WP_000106081.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39354.93 Da        Isoelectric Point: 9.0695

>NTDB_id=818035 QEP67_RS06140 WP_001013192.1 1179780..1180823(+) (comGA) [Bacillus cereus group sp. MS39]
MNGIESFANMILKEACRVQASDLHIVPRKKDVVVQLRIGKDLMTKHCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=818035 QEP67_RS06140 WP_001013192.1 1179780..1180823(+) (comGA) [Bacillus cereus group sp. MS39]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACATATTGTGCC
CAGGAAGAAGGATGTAGTGGTTCAACTGCGTATAGGAAAAGATTTAATGACGAAACACTGTATCGAGAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGACGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTACGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATCCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAAAAACTACTCTCTTTTTTAC
ATTATTCCCATGGATTACTCGTATTTACTGGACCGACTGGTTCTGGAAAGACAACAACAATGTATGCATTATTAGAGGTC
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACTAATGATGCGAAAGGGGCGATACTCCGATTTATGGATTTCGGTATAACGAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCACGAAACATTAGAATCTTCGATACGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTGTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.213

100

0.582
  pilB Vibrio campbellii strain DS40M4

35.411

100

0.36