Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QEP67_RS05875 Genome accession   NZ_CP123058
Coordinates   1127250..1127996 (+) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus cereus group sp. MS39     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1122250..1132996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS05845 (QEP67_05840) - 1122538..1124682 (+) 2145 WP_000946271.1 HD family phosphohydrolase -
  QEP67_RS05850 (QEP67_05845) ybeY 1124679..1125149 (+) 471 WP_000054689.1 rRNA maturation RNase YbeY -
  QEP67_RS05855 (QEP67_05850) - 1125146..1125499 (+) 354 WP_000715485.1 diacylglycerol kinase family protein -
  QEP67_RS05860 (QEP67_05855) - 1125600..1125998 (+) 399 WP_001086293.1 cytidine deaminase -
  QEP67_RS05865 (QEP67_05860) era 1125991..1126896 (+) 906 WP_001080239.1 GTPase Era -
  QEP67_RS05870 (QEP67_05865) - 1127073..1127216 (+) 144 WP_000883924.1 YqzL family protein -
  QEP67_RS05875 (QEP67_05870) recO 1127250..1127996 (+) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  QEP67_RS05880 (QEP67_05875) - 1128104..1128736 (+) 633 WP_000583754.1 helix-turn-helix transcriptional regulator -
  QEP67_RS05885 (QEP67_05880) - 1128766..1129578 (+) 813 WP_000368948.1 pyruvate, water dikinase regulatory protein -
  QEP67_RS05890 (QEP67_05885) dnaG 1130429..1132225 (+) 1797 WP_000528234.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=818034 QEP67_RS05875 WP_000487012.1 1127250..1127996(+) (recO) [Bacillus cereus group sp. MS39]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=818034 QEP67_RS05875 WP_000487012.1 1127250..1127996(+) (recO) [Bacillus cereus group sp. MS39]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CCCATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCGGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAGTCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548