Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBQ48_RS05745 Genome accession   NZ_CP123056
Coordinates   1169557..1170072 (+) Length   171 a.a.
NCBI ID   WP_006470425.1    Uniprot ID   -
Organism   Brucella intermedia strain TSBOI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1164557..1175072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBQ48_RS05730 (QBQ48_05730) - 1164655..1165500 (-) 846 WP_006470423.1 hypothetical protein -
  QBQ48_RS05735 (QBQ48_05735) uvrA 1165641..1168565 (-) 2925 WP_006470424.1 excinuclease ABC subunit UvrA -
  QBQ48_RS05740 (QBQ48_05740) - 1168681..1168892 (-) 212 Protein_1130 hypothetical protein -
  QBQ48_RS05745 (QBQ48_05745) ssb 1169557..1170072 (+) 516 WP_006470425.1 single-stranded DNA-binding protein Machinery gene
  QBQ48_RS05750 (QBQ48_05750) arsH 1170362..1171075 (-) 714 WP_006470426.1 arsenical resistance protein ArsH -
  QBQ48_RS05755 (QBQ48_05755) arsC 1171072..1171482 (-) 411 WP_006466773.1 arsenate reductase (glutaredoxin) -
  QBQ48_RS05760 (QBQ48_05760) arsB 1171479..1172540 (-) 1062 WP_006470427.1 ACR3 family arsenite efflux transporter -
  QBQ48_RS05765 (QBQ48_05765) - 1172685..1173044 (-) 360 WP_021585114.1 metalloregulator ArsR/SmtB family transcription factor -
  QBQ48_RS05770 (QBQ48_05770) phnF 1173197..1173949 (-) 753 WP_031346017.1 phosphonate metabolism transcriptional regulator PhnF -
  QBQ48_RS05775 (QBQ48_05775) phnG 1174062..1174577 (+) 516 WP_006470431.1 phosphonate C-P lyase system protein PhnG -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18436.17 Da        Isoelectric Point: 5.3476

>NTDB_id=818015 QBQ48_RS05745 WP_006470425.1 1169557..1170072(+) (ssb) [Brucella intermedia strain TSBOI]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGGSGGG
FSRDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=818015 QBQ48_RS05745 WP_006470425.1 1169557..1170072(+) (ssb) [Brucella intermedia strain TSBOI]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAACCTTGGTGCCGATCCGGAAATTCGTCGTCTGAACTCGGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCTGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGACCGCACCGAGT
GGCACAGCGTCGTCATTTTCAACGAGAACCTTGCCAAGGTCGCGGAGCAATATCTGAAGAAGGGCGCCAAGGTCTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAGTCGTACTTCAGAAGTT
CCGCGGCGAGTTGCAGATGCTCGACAGCCGTGGCGAAGGTGGCGGTGAGGGCCGTTCGTTCGGCGGTGGCGGCAATCGCA
ACCAGATGTCGGATTATTCCGGTGGCGGCGGCGACTTCGGTTCGTCCGGCCCGTCTTCGGGTGGCGGCAGCGGCGGCGGT
TTCTCCCGCGACCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.532
  ssb Vibrio cholerae strain A1552

63.559

69.006

0.439
  ssb Neisseria meningitidis MC58

37.222

100

0.392
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.386