Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QEP23_RS00935 Genome accession   NZ_CP123050
Coordinates   250381..252225 (+) Length   614 a.a.
NCBI ID   WP_042989947.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain iVS-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 245381..257225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP23_RS00910 (QEP23_00910) thiF 245452..246165 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  QEP23_RS00915 (QEP23_00915) thiS 246218..246412 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  QEP23_RS00920 (QEP23_00920) - 246848..247816 (+) 969 WP_042989950.1 aldo/keto reductase -
  QEP23_RS00925 (QEP23_00925) - 248000..248491 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  QEP23_RS00930 (QEP23_00930) rcrP 248618..250369 (+) 1752 WP_042989948.1 ABC transporter ATP-binding protein Regulator
  QEP23_RS00935 (QEP23_00935) rcrQ 250381..252225 (+) 1845 WP_042989947.1 ABC transporter ATP-binding protein Regulator
  QEP23_RS00940 (QEP23_00940) - 252396..253376 (+) 981 WP_042989945.1 aldo/keto reductase family oxidoreductase -
  QEP23_RS00945 (QEP23_00945) - 253461..254513 (-) 1053 WP_042989943.1 FAD:protein FMN transferase -
  QEP23_RS00950 (QEP23_00950) - 254952..256739 (+) 1788 WP_042989940.1 FTR1 family protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67609.59 Da        Isoelectric Point: 7.1999

>NTDB_id=817978 QEP23_RS00935 WP_042989947.1 250381..252225(+) (rcrQ) [Bifidobacterium adolescentis strain iVS-1]
MPRGPMGRGRGPVEKPKDFGGVMKKLMRFCRHYIPVMIFALILGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMN
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFFGALIMMFYNNVIMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEKGSIEQFEKYNKDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPRPVRGDVEFSHVRFGYDADKTIINDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQ
IVAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=817978 QEP23_RS00935 WP_042989947.1 250381..252225(+) (rcrQ) [Bifidobacterium adolescentis strain iVS-1]
ATGCCTAGAGGACCAATGGGACGCGGGCGCGGGCCCGTGGAGAAGCCGAAGGATTTCGGCGGTGTGATGAAGAAGCTGAT
GCGATTCTGCCGGCACTACATTCCGGTGATGATTTTCGCGCTGATACTGGGTGCGGCCGGCACGGTTTGCCAGATTATCG
GCCCGGACAAGCTTAAGGACATGACCAACGAGATTACGAAGGGTCTGCCTGCCATGGTGCACGGCAAGCCCGTCATGAAC
TCGATCGACATGGATGCGGTCTCACGTATCGCATGGCTGCTTGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGTTACCT
GCAGAGCTGGCTGATGGCTAACGTCACGCAACGCACCGCTCAGGAGCTGCGCGAGGCCATCAGCAAGAAAATCAATCGTC
TGCCGCTCAAGTATTTCGATAAAGTCAGCTACGGCGATGTGCTTAGCCGCATCACCAACGACGTCGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTCATCACGTCGATTACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGATCATGACGCTGTGTGCCATCGGCTCCGCGCTGCTCGGTCTGATCATCATGGGCGTGATCATGAAGGTATCGCAGA
AGTACTTCACTCGCCAGCAGATTGCGCTGGGCGATGTGAACGGCCATGTCGAGGAGATGTACACCGGACACACCGTGGTC
AAGGCGTACTGCGGCGAAAAGGGCTCCATCGAGCAGTTCGAAAAGTATAACAAGGACCTGTACGTGTCCGGCTGGAAAAG
CCAGTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGATACGTGGTGGTGTGCGTGGTCGGCG
CGGCGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCG
CTGTCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGA
GCCGGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTGGGCGTCGGCGCGGACGGCAAGCCGCGGCCGGTGCGCGGCG
ACGTGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCC
GGCCAGAAGGTGGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGAT
TTCCGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGG
TGCTGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAG
ATCGTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGA
CAAGGCGTCGCTTTCCCAGGGCCAGCGCCAGCTGCTGACGATCGCCCGCGCGATGGTGGAGGACGCGCCGATCCTGATTC
TTGACGAAGCCACCTCCTCGGTCGATACACGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACCGTGGGCCGC
ACGAGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGT
GGAACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCG
AGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-321)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.653

96.254

0.526