Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QEP23_RS00930 Genome accession   NZ_CP123050
Coordinates   248618..250369 (+) Length   583 a.a.
NCBI ID   WP_042989948.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain iVS-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 243618..255369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP23_RS00905 (QEP23_00905) - 244381..245295 (-) 915 WP_021912915.1 thiazole synthase -
  QEP23_RS00910 (QEP23_00910) thiF 245452..246165 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  QEP23_RS00915 (QEP23_00915) thiS 246218..246412 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  QEP23_RS00920 (QEP23_00920) - 246848..247816 (+) 969 WP_042989950.1 aldo/keto reductase -
  QEP23_RS00925 (QEP23_00925) - 248000..248491 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  QEP23_RS00930 (QEP23_00930) rcrP 248618..250369 (+) 1752 WP_042989948.1 ABC transporter ATP-binding protein Regulator
  QEP23_RS00935 (QEP23_00935) rcrQ 250381..252225 (+) 1845 WP_042989947.1 ABC transporter ATP-binding protein Regulator
  QEP23_RS00940 (QEP23_00940) - 252396..253376 (+) 981 WP_042989945.1 aldo/keto reductase family oxidoreductase -
  QEP23_RS00945 (QEP23_00945) - 253461..254513 (-) 1053 WP_042989943.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64506.62 Da        Isoelectric Point: 5.4543

>NTDB_id=817977 QEP23_RS00930 WP_042989948.1 248618..250369(+) (rcrP) [Bifidobacterium adolescentis strain iVS-1]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMRDIWVAGGKMLLVSLGSAACAIVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=817977 QEP23_RS00930 WP_042989948.1 248618..250369(+) (rcrP) [Bifidobacterium adolescentis strain iVS-1]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGATTATATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCGCGACA
TCTGGGTGGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCATCGTCACCGGCTTCATCGCCGCG
CGCGTGGGTGCCTCGTTCAGCCAGCGCCTGCGTTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGTCTGA
TGATGATCGTCAAGGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGCGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTCGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAATCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.251

100

0.515