Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QBD03_RS10045 Genome accession   NZ_CP122959
Coordinates   2015635..2016324 (+) Length   229 a.a.
NCBI ID   WP_025015997.1    Uniprot ID   A0AAF0KA01
Organism   Latilactobacillus sakei strain HUP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010635..2021324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS10025 (QBD03_10025) - 2011077..2011628 (+) 552 WP_280102831.1 isochorismatase family cysteine hydrolase -
  QBD03_RS10030 (QBD03_10030) fusA 2012198..2014285 (-) 2088 WP_016265721.1 elongation factor G -
  QBD03_RS10035 (QBD03_10035) rpsG 2014381..2014851 (-) 471 WP_004270185.1 30S ribosomal protein S7 -
  QBD03_RS10040 (QBD03_10040) rpsL 2014941..2015354 (-) 414 WP_004270179.1 30S ribosomal protein S12 -
  QBD03_RS10045 (QBD03_10045) comC 2015635..2016324 (+) 690 WP_025015997.1 A24 family peptidase Machinery gene
  QBD03_RS10050 (QBD03_10050) - 2016328..2016900 (-) 573 WP_025015998.1 isochorismatase family protein -
  QBD03_RS10055 (QBD03_10055) rpoC 2017074..2020718 (-) 3645 WP_035147345.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26178.49 Da        Isoelectric Point: 7.2085

>NTDB_id=817536 QBD03_RS10045 WP_025015997.1 2015635..2016324(+) (comC) [Latilactobacillus sakei strain HUP1]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=817536 QBD03_RS10045 WP_025015997.1 2015635..2016324(+) (comC) [Latilactobacillus sakei strain HUP1]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTCTTTTATAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGTGATGTCGAGTTACTCACTATCCTGACGCTCTGGGTGGGTCTTGAATCCGTTTTACGAATTCTCTTGGCGGCCTG
TCTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTGATACTACTCCTACAAACACCACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(99-193)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

98.69

100

0.987