Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QBD03_RS02875 Genome accession   NZ_CP122959
Coordinates   602083..602511 (+) Length   142 a.a.
NCBI ID   WP_280103149.1    Uniprot ID   A0AAF0K5E1
Organism   Latilactobacillus sakei strain HUP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 597083..607511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS02860 (QBD03_02860) - 598661..599749 (+) 1089 WP_035144637.1 MraY family glycosyltransferase -
  QBD03_RS02865 (QBD03_02865) - 599776..600441 (-) 666 WP_025016329.1 YigZ family protein -
  QBD03_RS02870 (QBD03_02870) comFA 600503..601840 (+) 1338 WP_280103148.1 DEAD/DEAH box helicase Machinery gene
  QBD03_RS02875 (QBD03_02875) comFC 602083..602511 (+) 429 WP_280103149.1 ComF family protein Machinery gene
  QBD03_RS02880 (QBD03_02880) raiA 602638..603183 (+) 546 WP_011374202.1 ribosome-associated translation inhibitor RaiA -
  QBD03_RS02885 (QBD03_02885) secA 603432..605795 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  QBD03_RS02890 (QBD03_02890) prfB 605865..606981 (+) 1117 WP_280103150.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16569.99 Da        Isoelectric Point: 9.8897

>NTDB_id=817511 QBD03_RS02875 WP_280103149.1 602083..602511(+) (comFC) [Latilactobacillus sakei strain HUP1]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKPNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPAKVQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=817511 QBD03_RS02875 WP_280103149.1 602083..602511(+) (comFC) [Latilactobacillus sakei strain HUP1]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTGTTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAACCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGACAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTGCCTGCTAAGGTGCAGTCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

97.887

100

0.979
  comFC Lactococcus lactis subsp. cremoris KW2

36.986

100

0.38