Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAD58_RS07105 Genome accession   NZ_CP122956
Coordinates   1468184..1469497 (-) Length   437 a.a.
NCBI ID   WP_286448300.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463184..1474497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS07075 (QAD58_07080) nadC 1463647..1464468 (-) 822 WP_286448298.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QAD58_RS07080 (QAD58_07085) nadA 1464468..1465478 (-) 1011 WP_180417470.1 quinolinate synthase NadA -
  QAD58_RS07085 (QAD58_07090) - 1465465..1466271 (-) 807 WP_286448299.1 phosphatidylserine decarboxylase -
  QAD58_RS07090 (QAD58_07095) - 1466268..1466771 (-) 504 WP_000953102.1 hypothetical protein -
  QAD58_RS07095 (QAD58_07100) - 1466784..1467278 (-) 495 WP_162979677.1 hypothetical protein -
  QAD58_RS07100 (QAD58_07105) mqnP 1467271..1468113 (-) 843 WP_231212726.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAD58_RS07105 (QAD58_07110) comEC/comE3 1468184..1469497 (-) 1314 WP_286448300.1 ComEC/Rec2 family competence protein Machinery gene
  QAD58_RS07110 (QAD58_07115) - 1469494..1470960 (-) 1467 WP_286448301.1 replicative DNA helicase -
  QAD58_RS07115 (QAD58_07120) - 1470971..1472365 (-) 1395 WP_286448302.1 NAD(P)H-hydrate dehydratase -
  QAD58_RS07120 (QAD58_07125) crdS 1472368..1473570 (-) 1203 WP_286449050.1 copper-sensing histidine kinase CrdS -
  QAD58_RS07125 (QAD58_07130) crdR 1473536..1474177 (-) 642 WP_286448303.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50100.10 Da        Isoelectric Point: 9.8860

>NTDB_id=817495 QAD58_RS07105 WP_286448300.1 1468184..1469497(-) (comEC/comE3) [Helicobacter pylori strain BT112]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFGIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGTHLFLT
ILSARFFKVYLSMNVLSVGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817495 QAD58_RS07105 WP_286448300.1 1468184..1469497(-) (comEC/comE3) [Helicobacter pylori strain BT112]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTGTTTATAGGGGATAGTTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGAAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTGGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCAGTTTTTTCGCCTTTATGGCTTTTGGGGACGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945