Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAD58_RS05500 Genome accession   NZ_CP122956
Coordinates   1149909..1150313 (-) Length   134 a.a.
NCBI ID   WP_154568961.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144909..1155313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS05455 (QAD58_05460) - 1145003..1146066 (-) 1064 Protein_1062 hypothetical protein -
  QAD58_RS05460 (QAD58_05465) - 1146056..1146841 (-) 786 WP_286448116.1 hypothetical protein -
  QAD58_RS05465 (QAD58_05470) - 1146841..1147227 (-) 387 WP_286449031.1 DUF1294 domain-containing protein -
  QAD58_RS05470 (QAD58_05475) - 1147312..1147479 (-) 168 WP_286448117.1 hypothetical protein -
  QAD58_RS05475 (QAD58_05480) - 1147567..1147728 (-) 162 WP_014536434.1 lysozyme -
  QAD58_RS05480 (QAD58_05485) - 1147748..1148242 (-) 495 WP_286448118.1 lysozyme -
  QAD58_RS05485 (QAD58_05490) - 1148253..1148813 (-) 561 WP_286448119.1 hypothetical protein -
  QAD58_RS05490 (QAD58_05495) - 1148797..1149135 (-) 339 WP_286448120.1 hypothetical protein -
  QAD58_RS05495 (QAD58_05500) - 1149318..1149785 (-) 468 WP_286448121.1 tetratricopeptide repeat protein -
  QAD58_RS05500 (QAD58_05505) dprB 1149909..1150313 (-) 405 WP_154568961.1 Holliday junction resolvase RuvX Machinery gene
  QAD58_RS05505 (QAD58_05510) dprA 1150310..1151110 (-) 801 WP_286448122.1 DNA-processing protein DprA Machinery gene
  QAD58_RS05510 (QAD58_05515) minE 1151122..1151355 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  QAD58_RS05515 (QAD58_05520) minD 1151352..1152158 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  QAD58_RS05520 (QAD58_05525) ilvC 1152183..1153175 (-) 993 WP_286448123.1 ketol-acid reductoisomerase -
  QAD58_RS05530 (QAD58_05535) - 1153424..1154206 (+) 783 WP_286448124.1 NAD+ synthase -
  QAD58_RS05535 (QAD58_05540) - 1154203..1155141 (+) 939 WP_286448125.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15386.88 Da        Isoelectric Point: 9.0343

>NTDB_id=817491 QAD58_RS05500 WP_154568961.1 1149909..1150313(-) (dprB) [Helicobacter pylori strain BT112]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817491 QAD58_RS05500 WP_154568961.1 1149909..1150313(-) (dprB) [Helicobacter pylori strain BT112]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
AATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCAAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948