Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP03_RS07525 Genome accession   NZ_CP122955
Coordinates   1569693..1571006 (-) Length   437 a.a.
NCBI ID   WP_286491415.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564693..1576006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS07495 (QAP03_07490) nadC 1565156..1565977 (-) 822 WP_286491421.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QAP03_RS07500 (QAP03_07495) nadA 1565977..1566987 (-) 1011 WP_286491420.1 quinolinate synthase NadA -
  QAP03_RS07505 (QAP03_07500) - 1566977..1567780 (-) 804 WP_286491419.1 phosphatidylserine decarboxylase -
  QAP03_RS07510 (QAP03_07505) - 1567777..1568280 (-) 504 WP_286491418.1 helix-turn-helix domain-containing protein -
  QAP03_RS07515 (QAP03_07510) - 1568293..1568787 (-) 495 WP_220946088.1 hypothetical protein -
  QAP03_RS07520 (QAP03_07515) mqnP 1568780..1569622 (-) 843 WP_286491417.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP03_RS07525 (QAP03_07520) comEC/comE3 1569693..1571006 (-) 1314 WP_286491415.1 ComEC/Rec2 family competence protein Machinery gene
  QAP03_RS07530 (QAP03_07525) - 1571003..1572469 (-) 1467 WP_286491413.1 replicative DNA helicase -
  QAP03_RS07535 (QAP03_07530) - 1572480..1573874 (-) 1395 WP_286491411.1 NAD(P)H-hydrate dehydratase -
  QAP03_RS07540 (QAP03_07535) crdS 1573877..1575079 (-) 1203 WP_286494520.1 copper-sensing histidine kinase CrdS -
  QAP03_RS07545 (QAP03_07540) crdR 1575045..1575686 (-) 642 WP_286491409.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50205.22 Da        Isoelectric Point: 9.8515

>NTDB_id=817477 QAP03_RS07525 WP_286491415.1 1569693..1571006(-) (comEC/comE3) [Helicobacter pylori strain BS27-2]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFLKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
MLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817477 QAP03_RS07525 WP_286491415.1 1569693..1571006(-) (comEC/comE3) [Helicobacter pylori strain BS27-2]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTTAAAACCTACAAGCCTGAACG
CTCAAATTCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAATCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTGGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTGAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTGGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
ATGTTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCAGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGTGTGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95