Detailed information NTG0817476

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QAP03_RS06660
• Genome accession: NZ_CP122955
• Coordinates: 1410997..1412205 (+)
• Length: 402 a.a.
• NCBI ID: WP_286491593.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS27-2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1405997..1417205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP03_RS06645 (QAP03_06640)	-	1408061..1408201 (+)	141	WP_021304036.1	hypothetical protein	-
QAP03_RS06650 (QAP03_06645)	-	1408194..1409333 (+)	1140	WP_286491596.1	VirB8/TrbF family protein	-
QAP03_RS06655 (QAP03_06650)	-	1409330..1411000 (+)	1671	WP_286491595.1	TrbG/VirB9 family P-type conjugative transfer protein	-
QAP03_RS06660 (QAP03_06655)	comB10	1410997..1412205 (+)	1209	WP_286491593.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP03_RS06665 (QAP03_06660)	-	1412189..1414411 (+)	2223	WP_286491591.1	collagen-like protein	-
QAP03_RS06670 (QAP03_06665)	-	1414424..1414864 (+)	441	Protein_1298	hypothetical protein	-
QAP03_RS06675 (QAP03_06670)	-	1414953..1416101 (-)	1149	WP_286490768.1	transposase	-
QAP03_RS06680 (QAP03_06675)	tnpA	1416070..1416537 (-)	468	WP_000063685.1	IS200/IS605 family transposase	-
QAP03_RS06685 (QAP03_06680)	-	1416717..1417094 (-)	378	WP_000365702.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 45006.59 Da
• Isoelectric Point: 10.0507

>NTDB_id=817476 QAP03_RS06660 WP_286491593.1 1410997..1412205(+) (comB10) [Helicobacter pylori strain BS27-2]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITSQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGVQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=817476 QAP03_RS06660 WP_286491593.1 1410997..1412205(+) (comB10) [Helicobacter pylori strain BS27-2]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTCGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGTCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATCACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGT
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.284	98.01	0.512