Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP03_RS06630 Genome accession   NZ_CP122955
Coordinates   1404974..1405237 (+) Length   87 a.a.
NCBI ID   WP_001177716.1    Uniprot ID   T0EUE0
Organism   Helicobacter pylori strain BS27-2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399974..1410237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS06600 (QAP03_06595) - 1400974..1401642 (-) 669 WP_286491609.1 HAD family hydrolase -
  QAP03_RS06605 (QAP03_06600) - 1401842..1402831 (-) 990 WP_286491607.1 DNA adenine methylase -
  QAP03_RS06610 (QAP03_06605) - 1403238..1404026 (+) 789 WP_121098128.1 integrase -
  QAP03_RS06615 (QAP03_06610) - 1404029..1404205 (+) 177 WP_100961331.1 hypothetical protein -
  QAP03_RS06620 (QAP03_06615) - 1404202..1404681 (+) 480 WP_286491601.1 hypothetical protein -
  QAP03_RS06625 (QAP03_06620) comB2 1404678..1404962 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  QAP03_RS06630 (QAP03_06625) comB3 1404974..1405237 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  QAP03_RS06635 (QAP03_06630) - 1405248..1405484 (+) 237 WP_001183709.1 hypothetical protein -
  QAP03_RS06640 (QAP03_06635) - 1405484..1408064 (+) 2581 Protein_1292 VirB4 family type IV secretion/conjugal transfer ATPase -
  QAP03_RS06645 (QAP03_06640) - 1408061..1408201 (+) 141 WP_021304036.1 hypothetical protein -
  QAP03_RS06650 (QAP03_06645) - 1408194..1409333 (+) 1140 WP_286491596.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9970.83 Da        Isoelectric Point: 5.7206

>NTDB_id=817475 QAP03_RS06630 WP_001177716.1 1404974..1405237(+) (comB3) [Helicobacter pylori strain BS27-2]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817475 QAP03_RS06630 WP_001177716.1 1404974..1405237(+) (comB3) [Helicobacter pylori strain BS27-2]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0EUE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609