Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP03_RS06625 Genome accession   NZ_CP122955
Coordinates   1404678..1404962 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori strain BS27-2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399678..1409962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS06600 (QAP03_06595) - 1400974..1401642 (-) 669 WP_286491609.1 HAD family hydrolase -
  QAP03_RS06605 (QAP03_06600) - 1401842..1402831 (-) 990 WP_286491607.1 DNA adenine methylase -
  QAP03_RS06610 (QAP03_06605) - 1403238..1404026 (+) 789 WP_121098128.1 integrase -
  QAP03_RS06615 (QAP03_06610) - 1404029..1404205 (+) 177 WP_100961331.1 hypothetical protein -
  QAP03_RS06620 (QAP03_06615) - 1404202..1404681 (+) 480 WP_286491601.1 hypothetical protein -
  QAP03_RS06625 (QAP03_06620) comB2 1404678..1404962 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  QAP03_RS06630 (QAP03_06625) comB3 1404974..1405237 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  QAP03_RS06635 (QAP03_06630) - 1405248..1405484 (+) 237 WP_001183709.1 hypothetical protein -
  QAP03_RS06640 (QAP03_06635) - 1405484..1408064 (+) 2581 Protein_1292 VirB4 family type IV secretion/conjugal transfer ATPase -
  QAP03_RS06645 (QAP03_06640) - 1408061..1408201 (+) 141 WP_021304036.1 hypothetical protein -
  QAP03_RS06650 (QAP03_06645) - 1408194..1409333 (+) 1140 WP_286491596.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=817474 QAP03_RS06625 WP_000736106.1 1404678..1404962(+) (comB2) [Helicobacter pylori strain BS27-2]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=817474 QAP03_RS06625 WP_000736106.1 1404678..1404962(+) (comB2) [Helicobacter pylori strain BS27-2]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553