Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS63_RS14280 Genome accession   NZ_AP023226
Coordinates   2950383..2951012 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YJ3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2945383..2956012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS63_RS14265 helD 2945625..2947679 (-) 2055 WP_001295354.1 DNA helicase IV -
  HXS63_RS14270 yccF 2947802..2948248 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HXS63_RS14275 yccS 2948258..2950420 (+) 2163 WP_000875058.1 YccS family putative transporter -
  HXS63_RS14280 sxy/tfoX 2950383..2951012 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HXS63_RS14285 sulA 2951231..2951740 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HXS63_RS14290 ompA 2952097..2953137 (+) 1041 WP_000750416.1 porin OmpA -
  HXS63_RS14295 matP 2953213..2953665 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HXS63_RS14300 ycbZ 2953851..2955611 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81747 HXS63_RS14280 WP_000839153.1 2950383..2951012(-) (sxy/tfoX) [Escherichia coli strain YJ3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81747 HXS63_RS14280 WP_000839153.1 2950383..2951012(-) (sxy/tfoX) [Escherichia coli strain YJ3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment