Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP03_RS00010 Genome accession   NZ_CP122955
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_286491326.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS00005 (QAP03_00005) dnaA 1..1368 (+) 1368 WP_286491327.1 chromosomal replication initiator protein DnaA -
  QAP03_RS00010 (QAP03_00010) comH 1597..3036 (+) 1440 WP_286491326.1 competence protein Machinery gene
  QAP03_RS00020 (QAP03_00020) - 3217..3969 (+) 753 WP_156557648.1 exodeoxyribonuclease III -
  QAP03_RS00025 (QAP03_00025) - 3966..4601 (-) 636 WP_286491323.1 outer membrane protein -
  QAP03_RS00030 (QAP03_00030) - 4605..4961 (-) 357 WP_286491322.1 hypothetical protein -
  QAP03_RS00035 (QAP03_00035) recG 5043..6935 (+) 1893 WP_286491321.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54905.86 Da        Isoelectric Point: 7.0432

>NTDB_id=817456 QAP03_RS00010 WP_286491326.1 1597..3036(+) (comH) [Helicobacter pylori strain BS27-2]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTFTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQIPSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
ATPSKTSPTNEVKTPTNDAKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNADISENNESNENKDSVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFALFQAR
SSTEKCKRARVRKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETNELAYSSTRKSEVKQNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817456 QAP03_RS00010 WP_286491326.1 1597..3036(+) (comH) [Helicobacter pylori strain BS27-2]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTTACGTTCACTATCACCCACATATCCACCGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCCCACCAAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTCCTCAAAATTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAACTCCTAGTAAAACAAGCCCCACTAATGAAGTTAAAACGCCAACAAACGATGCTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTCATAGCGCCACCCACTGAAAAAACGCTCCCTAATAACACCCCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAAGATAGTGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCAACAGACATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTCGCCCTTTTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGTGCGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAAGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.572

100

0.946