Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP06_RS07230 Genome accession   NZ_CP122954
Coordinates   1510942..1511223 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain BS06     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505942..1516223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS07210 (QAP06_07210) - 1506671..1508011 (-) 1341 WP_286467638.1 hypothetical protein -
  QAP06_RS07220 (QAP06_07220) comB4 1508314..1510677 (-) 2364 WP_286465630.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP06_RS07225 (QAP06_07225) comB3 1510679..1510942 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  QAP06_RS07230 (QAP06_07230) comB2 1510942..1511223 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP06_RS07235 (QAP06_07235) - 1511369..1512196 (-) 828 WP_286465631.1 DUF5718 family protein -
  QAP06_RS07240 (QAP06_07240) - 1512284..1513336 (-) 1053 WP_286465633.1 MnmA/TRMU family protein -
  QAP06_RS07245 (QAP06_07245) dnaG 1513333..1515012 (-) 1680 WP_286465634.1 DNA primase -
  QAP06_RS07250 (QAP06_07250) groES 1515287..1515643 (+) 357 WP_000671945.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=817455 QAP06_RS07230 WP_001272686.1 1510942..1511223(-) (comB2) [Helicobacter pylori strain BS06]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817455 QAP06_RS07230 WP_001272686.1 1510942..1511223(-) (comB2) [Helicobacter pylori strain BS06]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGCTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989