Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP06_RS07225 Genome accession   NZ_CP122954
Coordinates   1510679..1510942 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505679..1515942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS07210 (QAP06_07210) - 1506671..1508011 (-) 1341 WP_286467638.1 hypothetical protein -
  QAP06_RS07220 (QAP06_07220) comB4 1508314..1510677 (-) 2364 WP_286465630.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP06_RS07225 (QAP06_07225) comB3 1510679..1510942 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  QAP06_RS07230 (QAP06_07230) comB2 1510942..1511223 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP06_RS07235 (QAP06_07235) - 1511369..1512196 (-) 828 WP_286465631.1 DUF5718 family protein -
  QAP06_RS07240 (QAP06_07240) - 1512284..1513336 (-) 1053 WP_286465633.1 MnmA/TRMU family protein -
  QAP06_RS07245 (QAP06_07245) dnaG 1513333..1515012 (-) 1680 WP_286465634.1 DNA primase -
  QAP06_RS07250 (QAP06_07250) groES 1515287..1515643 (+) 357 WP_000671945.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=817454 QAP06_RS07225 WP_000584956.1 1510679..1510942(-) (comB3) [Helicobacter pylori strain BS06]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817454 QAP06_RS07225 WP_000584956.1 1510679..1510942(-) (comB3) [Helicobacter pylori strain BS06]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTAGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1