Detailed information NTG0817452

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAP06_RS07125
• Genome accession: NZ_CP122954
• Coordinates: 1487673..1488728 (-)
• Length: 351 a.a.
• NCBI ID: WP_286467626.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS06
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1482673..1493728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP06_RS07100 (QAP06_07100)	-	1483222..1484634 (-)	1413	WP_286465614.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP06_RS07105 (QAP06_07105)	comB10	1484704..1485834 (-)	1131	WP_286465615.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP06_RS07110 (QAP06_07110)	comB9	1485827..1486804 (-)	978	WP_286465617.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP06_RS07115 (QAP06_07115)	comB8	1486804..1487547 (-)	744	WP_286465618.1	virB8 family protein	Machinery gene
QAP06_RS07120 (QAP06_07120)	comB7	1487544..1487657 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
QAP06_RS07125 (QAP06_07125)	comB6	1487673..1488728 (-)	1056	WP_286467626.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP06_RS07130 (QAP06_07130)	-	1488736..1489740 (-)	1005	WP_140547967.1	PDZ domain-containing protein	-
QAP06_RS07135 (QAP06_07135)	-	1489740..1490042 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
QAP06_RS07140 (QAP06_07140)	panD	1490045..1490398 (-)	354	WP_140478563.1	aspartate 1-decarboxylase	-
QAP06_RS07145 (QAP06_07145)	-	1490388..1492613 (-)	2226	WP_286465621.1	ATP-dependent Clp protease ATP-binding subunit	-
QAP06_RS07150 (QAP06_07150)	-	1492613..1492888 (-)	276	WP_000784933.1	ATP-dependent Clp protease adaptor ClpS	-
QAP06_RS07155 (QAP06_07155)	-	1492911..1493324 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39739.79 Da
• Isoelectric Point: 9.2395

>NTDB_id=817452 QAP06_RS07125 WP_286467626.1 1487673..1488728(-) (comB6) [Helicobacter pylori strain BS06]
MKNDAYKIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLLEALLFVGFFALFNY
ALKNPMHFYEFFQNTIFIAPNMIAQSLSQSLGNFSNHALSLDFIFNHGFYAISFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVMACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817452 QAP06_RS07125 WP_286467626.1 1487673..1488728(-) (comB6) [Helicobacter pylori strain BS06]
ATGAAAAATGACGCTTATAAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACACTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGGGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTATGCCATTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTACAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGATGGCATGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.726	100	0.957