Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP06_RS05795 Genome accession   NZ_CP122954
Coordinates   1216951..1217355 (-) Length   134 a.a.
NCBI ID   WP_140471383.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1211951..1222355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS07750 - 1211974..1212528 (-) 555 WP_350317258.1 hypothetical protein -
  QAP06_RS07755 - 1212529..1213194 (-) 666 WP_350317259.1 hypothetical protein -
  QAP06_RS05755 (QAP06_05755) - 1213191..1213976 (-) 786 WP_286465399.1 hypothetical protein -
  QAP06_RS05760 (QAP06_05760) - 1213976..1214357 (-) 382 Protein_1122 DUF1294 domain-containing protein -
  QAP06_RS05765 (QAP06_05765) - 1214661..1214927 (-) 267 WP_001883605.1 hypothetical protein -
  QAP06_RS05770 (QAP06_05770) - 1214948..1215085 (-) 138 WP_286465401.1 hypothetical protein -
  QAP06_RS05775 (QAP06_05775) - 1215143..1215295 (-) 153 WP_286465402.1 hypothetical protein -
  QAP06_RS05780 (QAP06_05780) - 1215346..1215906 (-) 561 WP_286465404.1 hypothetical protein -
  QAP06_RS05785 (QAP06_05785) - 1215890..1216228 (-) 339 WP_127943425.1 hypothetical protein -
  QAP06_RS05790 (QAP06_05790) - 1216356..1216821 (-) 466 Protein_1128 tetratricopeptide repeat protein -
  QAP06_RS05795 (QAP06_05795) dprB 1216951..1217355 (-) 405 WP_140471383.1 Holliday junction resolvase RuvX Machinery gene
  QAP06_RS05800 (QAP06_05800) dprA 1217352..1218152 (-) 801 WP_286465405.1 DNA-processing protein DprA Machinery gene
  QAP06_RS05805 (QAP06_05805) minE 1218164..1218397 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  QAP06_RS05810 (QAP06_05810) minD 1218394..1219200 (-) 807 WP_015643959.1 septum site-determining protein MinD -
  QAP06_RS05815 (QAP06_05815) ilvC 1219224..1220216 (-) 993 WP_286465407.1 ketol-acid reductoisomerase -
  QAP06_RS05825 (QAP06_05825) - 1220465..1221247 (+) 783 WP_286465409.1 NAD+ synthase -
  QAP06_RS05830 (QAP06_05830) - 1221244..1222182 (+) 939 WP_286465410.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15245.68 Da        Isoelectric Point: 9.1839

>NTDB_id=817444 QAP06_RS05795 WP_140471383.1 1216951..1217355(-) (dprB) [Helicobacter pylori strain BS06]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSNLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817444 QAP06_RS05795 WP_140471383.1 1216951..1217355(-) (dprB) [Helicobacter pylori strain BS06]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCAATTTGTTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCTAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963