Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP06_RS00010 Genome accession   NZ_CP122954
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_286465712.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS00005 (QAP06_00005) dnaA 1..1368 (+) 1368 WP_286465711.1 chromosomal replication initiator protein DnaA -
  QAP06_RS00010 (QAP06_00010) comH 1597..3036 (+) 1440 WP_286465712.1 competence protein Machinery gene
  QAP06_RS00020 (QAP06_00020) - 3216..3968 (+) 753 WP_108335067.1 exodeoxyribonuclease III -
  QAP06_RS00025 (QAP06_00025) - 3965..4600 (-) 636 WP_050829552.1 outer membrane protein -
  QAP06_RS00030 (QAP06_00030) - 4604..4951 (-) 348 WP_000837034.1 hypothetical protein -
  QAP06_RS00035 (QAP06_00035) recG 5033..6904 (+) 1872 WP_286465715.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54881.88 Da        Isoelectric Point: 7.7127

>NTDB_id=817434 QAP06_RS00010 WP_286465712.1 1597..3036(+) (comH) [Helicobacter pylori strain BS06]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHMSTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
ATPSKTSPTNEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNAPNANINEHNESNKNRDNVEKQAVRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYSKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDNQTEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817434 QAP06_RS00010 WP_286465712.1 1597..3036(+) (comH) [Helicobacter pylori strain BS06]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATGTCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCACACCCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAACAAACCCCATTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAACTCCTAGCAAAACAAGCCCCACTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTCATAGCACCACCCACTGAAAAAACGCTCCCTAACAACGCTCCTAACGCTAATATTA
ATGAACACAATGAAAGCAATAAGAATAGGGATAATGTGGAAAAACAAGCCGTTAGAGATCCTAATATCAAAGAATTTGCA
TGTGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATTCTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTAAAAGCCATTTATGAGCGCCCCAAACAAGACAATC
AAACAGAGCCAACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCTTTAGAAATAGAAGAACAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.363

100

0.944