Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   PH204_RS07400 Genome accession   NZ_CP122953
Coordinates   1539478..1540791 (-) Length   437 a.a.
NCBI ID   WP_286447176.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534478..1545791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH204_RS07370 (PH204_07370) nadC 1534941..1535762 (-) 822 WP_286447168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PH204_RS07375 (PH204_07375) nadA 1535762..1536772 (-) 1011 WP_286447170.1 quinolinate synthase NadA -
  PH204_RS07380 (PH204_07380) - 1536762..1537565 (-) 804 WP_286447172.1 phosphatidylserine decarboxylase -
  PH204_RS07385 (PH204_07385) - 1537559..1538065 (-) 507 WP_286447173.1 helix-turn-helix domain-containing protein -
  PH204_RS07390 (PH204_07390) - 1538078..1538572 (-) 495 WP_286447174.1 hypothetical protein -
  PH204_RS07395 (PH204_07395) mqnP 1538565..1539407 (-) 843 WP_230298388.1 menaquinone biosynthesis prenyltransferase MqnP -
  PH204_RS07400 (PH204_07400) comEC/comE3 1539478..1540791 (-) 1314 WP_286447176.1 ComEC/Rec2 family competence protein Machinery gene
  PH204_RS07405 (PH204_07405) - 1540788..1542254 (-) 1467 WP_286447180.1 replicative DNA helicase -
  PH204_RS07410 (PH204_07410) - 1542265..1543659 (-) 1395 WP_286447182.1 NAD(P)H-hydrate dehydratase -
  PH204_RS07415 (PH204_07415) crdS 1543662..1544864 (-) 1203 WP_286447852.1 copper-sensing histidine kinase CrdS -
  PH204_RS07420 (PH204_07420) crdR 1544830..1545471 (-) 642 WP_286447183.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50149.17 Da        Isoelectric Point: 9.8315

>NTDB_id=817432 PH204_RS07400 WP_286447176.1 1539478..1540791(-) (comEC/comE3) [Helicobacter pylori strain BS30]
MKDKTFQGAFELLSTPKEYLLCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYSKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKDLQYRHAQFFGKIKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHSIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLNFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDHILNMPLIIPTISVYSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817432 PH204_RS07400 WP_286447176.1 1539478..1540791(-) (comEC/comE3) [Helicobacter pylori strain BS30]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTGTTGTGTGGGGTTGTTTTAAG
TCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCTTAAACG
CTCAAATCTTGTTGCAATACTCTAAGACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAGACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAATTTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGAAAACAGGATTTTAAATCGCATT
TGCGCCATTCCATTGACAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGAGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGTTAGGGTATTTATTGCTGTTAAATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCCGTGGGTTTGGGGTCTTTATTAGATCACA
TTTTAAACATGCCTTTAATAATCCCTACGATTTCAGTTTATTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTGAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938