Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   R0Q54_RS19970 Genome accession   NZ_CP136992
Coordinates   3770744..3771175 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain J46     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765744..3776175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS19950 (R0Q54_19950) spoVS 3766306..3766566 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  R0Q54_RS19955 (R0Q54_19955) tdh 3766831..3767874 (+) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  R0Q54_RS19960 (R0Q54_19960) kbl 3767887..3769065 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  R0Q54_RS19965 (R0Q54_19965) miaB 3769213..3770742 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  R0Q54_RS19970 (R0Q54_19970) ymcA 3770744..3771175 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  R0Q54_RS19975 (R0Q54_19975) cotE 3771437..3771982 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  R0Q54_RS19980 (R0Q54_19980) hexA 3772115..3774691 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=817417 R0Q54_RS19970 WP_003231834.1 3770744..3771175(+) (ymcA) [Bacillus subtilis strain J46]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=817417 R0Q54_RS19970 WP_003231834.1 3770744..3771175(+) (ymcA) [Bacillus subtilis strain J46]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AACAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAATCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1