Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   PH204_RS01050 Genome accession   NZ_CP122953
Coordinates   212694..212975 (+) Length   93 a.a.
NCBI ID   WP_101000542.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS30     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207694..217975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH204_RS01030 (PH204_01030) groES 208273..208629 (-) 357 WP_101021102.1 co-chaperone GroES -
  PH204_RS01035 (PH204_01035) dnaG 208903..210582 (+) 1680 WP_286447402.1 DNA primase -
  PH204_RS01040 (PH204_01040) - 210579..211631 (+) 1053 WP_286447403.1 MnmA/TRMU family protein -
  PH204_RS01045 (PH204_01045) - 211721..212548 (+) 828 WP_286447404.1 DUF5718 family protein -
  PH204_RS01050 (PH204_01050) comB2 212694..212975 (+) 282 WP_101000542.1 TrbC/VirB2 family protein Machinery gene
  PH204_RS01055 (PH204_01055) comB3 212975..213238 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  PH204_RS01060 (PH204_01060) comB4 213240..215603 (+) 2364 WP_286447405.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  PH204_RS01070 (PH204_01070) - 215923..217263 (+) 1341 WP_286447803.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10479.71 Da        Isoelectric Point: 9.1450

>NTDB_id=817416 PH204_RS01050 WP_101000542.1 212694..212975(+) (comB2) [Helicobacter pylori strain BS30]
MSAHFLKIIFLVGMCVSSLSAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817416 PH204_RS01050 WP_101000542.1 212694..212975(+) (comB2) [Helicobacter pylori strain BS30]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTCCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGGATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978