Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   PH204_RS00010 Genome accession   NZ_CP122953
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_286447267.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS30     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH204_RS00005 (PH204_00005) dnaA 1..1368 (+) 1368 WP_286447266.1 chromosomal replication initiator protein DnaA -
  PH204_RS00010 (PH204_00010) comH 1597..3036 (+) 1440 WP_286447267.1 competence protein Machinery gene
  PH204_RS00020 (PH204_00020) - 3216..3968 (+) 753 WP_181228755.1 exodeoxyribonuclease III -
  PH204_RS00025 (PH204_00025) - 3965..4600 (-) 636 WP_000668050.1 outer membrane protein -
  PH204_RS00030 (PH204_00030) - 4604..4951 (-) 348 WP_140593018.1 hypothetical protein -
  PH204_RS00035 (PH204_00035) recG 5033..6904 (+) 1872 WP_286447275.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54822.74 Da        Isoelectric Point: 7.1644

>NTDB_id=817414 PH204_RS00010 WP_286447267.1 1597..3036(+) (comH) [Helicobacter pylori strain BS30]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLNSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKTSPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYERHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817414 PH204_RS00010 WP_286447267.1 1597..3036(+) (comH) [Helicobacter pylori strain BS30]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTAATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTTACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAACAAGCCCCACTAATGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAACGCCCCAAACAAGACGATC
AAGTAGAGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGAGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAACAGCCGCGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.077

100

0.971