Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   QAP05_RS01265 Genome accession   NZ_CP122952
Coordinates   240511..241719 (-) Length   402 a.a.
NCBI ID   WP_286491593.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235511..246719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP05_RS01240 (QAP05_01240) - 235622..235999 (+) 378 WP_000365702.1 hypothetical protein -
  QAP05_RS01245 (QAP05_01245) tnpA 236179..236646 (+) 468 WP_000063685.1 IS200/IS605 family transposase -
  QAP05_RS01250 (QAP05_01250) - 236615..237763 (+) 1149 WP_286490768.1 transposase -
  QAP05_RS01255 (QAP05_01255) - 237852..238292 (-) 441 Protein_249 hypothetical protein -
  QAP05_RS01260 (QAP05_01260) - 238305..240527 (-) 2223 WP_286491591.1 collagen-like protein -
  QAP05_RS01265 (QAP05_01265) comB10 240511..241719 (-) 1209 WP_286491593.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP05_RS01270 (QAP05_01270) - 241716..243386 (-) 1671 WP_286491595.1 TrbG/VirB9 family P-type conjugative transfer protein -
  QAP05_RS01275 (QAP05_01275) - 243383..244522 (-) 1140 WP_286491596.1 VirB8/TrbF family protein -
  QAP05_RS01280 (QAP05_01280) - 244515..244655 (-) 141 WP_021304036.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 45006.59 Da        Isoelectric Point: 10.0507

>NTDB_id=817393 QAP05_RS01265 WP_286491593.1 240511..241719(-) (comB10) [Helicobacter pylori strain BS27-1]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITSQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGVQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=817393 QAP05_RS01265 WP_286491593.1 240511..241719(-) (comB10) [Helicobacter pylori strain BS27-1]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTCGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGTCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATCACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGT
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(178-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.284

98.01

0.512