Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP05_RS00395 Genome accession   NZ_CP122952
Coordinates   81709..83022 (+) Length   437 a.a.
NCBI ID   WP_286491415.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 76709..88022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP05_RS00375 (QAP05_00375) crdR 77029..77670 (+) 642 WP_286491409.1 copper response regulator transcription factor CrdR -
  QAP05_RS00380 (QAP05_00380) crdS 77636..78838 (+) 1203 WP_286494520.1 copper-sensing histidine kinase CrdS -
  QAP05_RS00385 (QAP05_00385) - 78841..80235 (+) 1395 WP_286491411.1 NAD(P)H-hydrate dehydratase -
  QAP05_RS00390 (QAP05_00390) - 80246..81712 (+) 1467 WP_286491413.1 replicative DNA helicase -
  QAP05_RS00395 (QAP05_00395) comEC/comE3 81709..83022 (+) 1314 WP_286491415.1 ComEC/Rec2 family competence protein Machinery gene
  QAP05_RS00400 (QAP05_00400) mqnP 83093..83935 (+) 843 WP_286491417.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP05_RS00405 (QAP05_00405) - 83928..84422 (+) 495 WP_220946088.1 hypothetical protein -
  QAP05_RS00410 (QAP05_00410) - 84435..84938 (+) 504 WP_286491418.1 helix-turn-helix domain-containing protein -
  QAP05_RS00415 (QAP05_00415) - 84935..85738 (+) 804 WP_286491419.1 phosphatidylserine decarboxylase -
  QAP05_RS00420 (QAP05_00420) nadA 85728..86738 (+) 1011 WP_286491420.1 quinolinate synthase NadA -
  QAP05_RS00425 (QAP05_00425) nadC 86738..87559 (+) 822 WP_286491421.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50205.22 Da        Isoelectric Point: 9.8515

>NTDB_id=817392 QAP05_RS00395 WP_286491415.1 81709..83022(+) (comEC/comE3) [Helicobacter pylori strain BS27-1]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFLKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
MLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817392 QAP05_RS00395 WP_286491415.1 81709..83022(+) (comEC/comE3) [Helicobacter pylori strain BS27-1]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTTAAAACCTACAAGCCTGAACG
CTCAAATTCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAATCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTGGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTGAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTGGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
ATGTTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCAGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGTGTGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95