Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAD59_RS07165 Genome accession   NZ_CP122951
Coordinates   1483165..1483446 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain BS26     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478165..1488446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS07145 (QAD59_07150) - 1478876..1480216 (-) 1341 WP_041201979.1 hypothetical protein -
  QAD59_RS07155 (QAD59_07160) comB4 1480537..1482900 (-) 2364 WP_286490007.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAD59_RS07160 (QAD59_07165) comB3 1482902..1483165 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  QAD59_RS07165 (QAD59_07170) comB2 1483165..1483446 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAD59_RS07170 (QAD59_07175) - 1483591..1484418 (-) 828 WP_050835312.1 DUF5718 family protein -
  QAD59_RS07175 (QAD59_07180) - 1484509..1485561 (-) 1053 WP_286490014.1 MnmA/TRMU family protein -
  QAD59_RS07180 (QAD59_07185) dnaG 1485558..1487237 (-) 1680 WP_286490016.1 DNA primase -
  QAD59_RS07185 (QAD59_07190) groES 1487512..1487868 (+) 357 WP_000671949.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=817390 QAD59_RS07165 WP_001272686.1 1483165..1483446(-) (comB2) [Helicobacter pylori strain BS26]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817390 QAD59_RS07165 WP_001272686.1 1483165..1483446(-) (comB2) [Helicobacter pylori strain BS26]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989