Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAD59_RS07160 Genome accession   NZ_CP122951
Coordinates   1482902..1483165 (-) Length   87 a.a.
NCBI ID   WP_000584971.1    Uniprot ID   A0A0L0QIL1
Organism   Helicobacter pylori strain BS26     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477902..1488165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS07145 (QAD59_07150) - 1478876..1480216 (-) 1341 WP_041201979.1 hypothetical protein -
  QAD59_RS07155 (QAD59_07160) comB4 1480537..1482900 (-) 2364 WP_286490007.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAD59_RS07160 (QAD59_07165) comB3 1482902..1483165 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  QAD59_RS07165 (QAD59_07170) comB2 1483165..1483446 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAD59_RS07170 (QAD59_07175) - 1483591..1484418 (-) 828 WP_050835312.1 DUF5718 family protein -
  QAD59_RS07175 (QAD59_07180) - 1484509..1485561 (-) 1053 WP_286490014.1 MnmA/TRMU family protein -
  QAD59_RS07180 (QAD59_07185) dnaG 1485558..1487237 (-) 1680 WP_286490016.1 DNA primase -
  QAD59_RS07185 (QAD59_07190) groES 1487512..1487868 (+) 357 WP_000671949.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=817389 QAD59_RS07160 WP_000584971.1 1482902..1483165(-) (comB3) [Helicobacter pylori strain BS26]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817389 QAD59_RS07160 WP_000584971.1 1482902..1483165(-) (comB3) [Helicobacter pylori strain BS26]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QIL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966