Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAD59_RS07015 Genome accession   NZ_CP122951
Coordinates   1446936..1448249 (-) Length   437 a.a.
NCBI ID   WP_286489962.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441936..1453249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS06985 (QAD59_06990) nadC 1442399..1443220 (-) 822 WP_286489950.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QAD59_RS06990 (QAD59_06995) nadA 1443220..1444230 (-) 1011 WP_286489954.1 quinolinate synthase NadA -
  QAD59_RS06995 (QAD59_07000) - 1444217..1445023 (-) 807 WP_140468077.1 phosphatidylserine decarboxylase -
  QAD59_RS07000 (QAD59_07005) - 1445020..1445523 (-) 504 WP_121278961.1 helix-turn-helix domain-containing protein -
  QAD59_RS07005 (QAD59_07010) - 1445536..1446030 (-) 495 WP_000544981.1 hypothetical protein -
  QAD59_RS07010 (QAD59_07015) mqnP 1446023..1446865 (-) 843 WP_231264506.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAD59_RS07015 (QAD59_07020) comEC/comE3 1446936..1448249 (-) 1314 WP_286489962.1 ComEC/Rec2 family competence protein Machinery gene
  QAD59_RS07020 (QAD59_07025) - 1448246..1449712 (-) 1467 WP_286489963.1 replicative DNA helicase -
  QAD59_RS07025 (QAD59_07030) - 1449723..1451117 (-) 1395 WP_286489966.1 NAD(P)H-hydrate dehydratase -
  QAD59_RS07030 (QAD59_07035) crdS 1451120..1452322 (-) 1203 WP_286490549.1 copper-sensing histidine kinase CrdS -
  QAD59_RS07035 (QAD59_07040) crdR 1452288..1452929 (-) 642 WP_001169808.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50218.23 Da        Isoelectric Point: 9.9889

>NTDB_id=817386 QAD59_RS07015 WP_286489962.1 1446936..1448249(-) (comEC/comE3) [Helicobacter pylori strain BS26]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLKSLRSCFFQTYSFSLTRKQDFKSHWRHFINSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDMGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
TLVFLNMLIITHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHVVGLGSLLDSILNMPLMIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817386 QAD59_RS07015 WP_286489962.1 1446936..1448249(-) (comEC/comE3) [Helicobacter pylori strain BS26]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTCGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAAAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTAACAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATTAACCACTTATTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCAAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ACGATATGGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTACGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGTTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.364

100

0.934