Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAD59_RS05545 Genome accession   NZ_CP122951
Coordinates   1153287..1153691 (-) Length   134 a.a.
NCBI ID   WP_140445955.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148287..1158691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS05515 (QAD59_05520) - 1148392..1149405 (-) 1014 Protein_1072 hypothetical protein -
  QAD59_RS05520 (QAD59_05525) - 1149807..1150880 (+) 1074 WP_279963062.1 tyrosine-type recombinase/integrase -
  QAD59_RS05525 (QAD59_05530) - 1150962..1151646 (-) 685 Protein_1074 CAAX protease -
  QAD59_RS07730 - 1151687..1151811 (-) 125 Protein_1075 lysozyme -
  QAD59_RS05530 (QAD59_05535) - 1151822..1152388 (-) 567 WP_140596169.1 hypothetical protein -
  QAD59_RS05535 (QAD59_05540) - 1152372..1152710 (-) 339 WP_000699916.1 hypothetical protein -
  QAD59_RS05540 (QAD59_05545) - 1152900..1153122 (-) 223 Protein_1078 tetratricopeptide repeat protein -
  QAD59_RS05545 (QAD59_05550) dprB 1153287..1153691 (-) 405 WP_140445955.1 Holliday junction resolvase RuvX Machinery gene
  QAD59_RS05550 (QAD59_05555) dprA 1153688..1154488 (-) 801 WP_286489576.1 DNA-processing protein DprA Machinery gene
  QAD59_RS05555 (QAD59_05560) minE 1154500..1154733 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  QAD59_RS05560 (QAD59_05565) minD 1154730..1155536 (-) 807 WP_180615989.1 septum site-determining protein MinD -
  QAD59_RS05565 (QAD59_05570) ilvC 1155561..1156553 (-) 993 WP_286489577.1 ketol-acid reductoisomerase -
  QAD59_RS05575 (QAD59_05580) - 1156811..1157593 (+) 783 WP_279963065.1 NAD+ synthase -
  QAD59_RS05580 (QAD59_05585) - 1157590..1158528 (+) 939 WP_279963066.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15236.68 Da        Isoelectric Point: 8.2822

>NTDB_id=817382 QAD59_RS05545 WP_140445955.1 1153287..1153691(-) (dprB) [Helicobacter pylori strain BS26]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGNKNKRLAIKDGRLDSLSACRILEHYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817382 QAD59_RS05545 WP_140445955.1 1153287..1153691(-) (dprB) [Helicobacter pylori strain BS26]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGCAATAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCACTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933