Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAD59_RS00010 Genome accession   NZ_CP122951
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_286490095.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS26     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS00005 (QAD59_00005) dnaA 1..1368 (+) 1368 WP_220930471.1 chromosomal replication initiator protein DnaA -
  QAD59_RS00010 (QAD59_00010) comH 1589..3028 (+) 1440 WP_286490095.1 competence protein Machinery gene
  QAD59_RS00020 (QAD59_00020) - 3206..3958 (+) 753 WP_286490096.1 exodeoxyribonuclease III -
  QAD59_RS00025 (QAD59_00025) - 3955..4590 (-) 636 WP_286490097.1 outer membrane protein -
  QAD59_RS00030 (QAD59_00030) - 4594..4947 (-) 354 WP_286490098.1 hypothetical protein -
  QAD59_RS00035 (QAD59_00035) recG 5029..6900 (+) 1872 WP_286490099.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54928.78 Da        Isoelectric Point: 7.0061

>NTDB_id=817371 QAD59_RS00010 WP_286490095.1 1589..3028(+) (comH) [Helicobacter pylori strain BS26]
MKKTLYLSFFLTFSNPLQALVIELLEEIKTSPYKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKELQSHQMPSLNAPIQKPQNKPTSSQQSSQNFSYSESKLGSKNPRNSLLQPL
ATPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADINEHHESNENRDSVEKQAIRDPNIREFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817371 QAD59_RS00010 WP_286490095.1 1589..3028(+) (comH) [Helicobacter pylori strain BS26]
ATGAAAAAAACCCTTTATCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCACCGTATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCCAATCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ACTAAAAGAGCTGCAATCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTTCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAGAAACAGCCTTTTACAGCCTTTA
GCTACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAACACCATGAAAGCAATGAAAATAGAGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATATTAGAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCTAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACTCAATTAGTGAAAGCTGTATATGAGCGTCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAGCGAATTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.649

100

0.916