Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP01_RS00805 Genome accession   NZ_CP122950
Coordinates   173636..174949 (+) Length   437 a.a.
NCBI ID   WP_286498376.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168636..179949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS00785 (QAP01_00785) crdR 168962..169603 (+) 642 WP_286444509.1 copper response regulator transcription factor CrdR -
  QAP01_RS00790 (QAP01_00790) crdS 169569..170771 (+) 1203 WP_286498752.1 copper-sensing histidine kinase CrdS -
  QAP01_RS00795 (QAP01_00795) - 170774..172168 (+) 1395 WP_286498374.1 NAD(P)H-hydrate dehydratase -
  QAP01_RS00800 (QAP01_00800) - 172179..173639 (+) 1461 WP_286498375.1 replicative DNA helicase -
  QAP01_RS00805 (QAP01_00805) comEC/comE3 173636..174949 (+) 1314 WP_286498376.1 ComEC/Rec2 family competence protein Machinery gene
  QAP01_RS00810 (QAP01_00810) mqnP 175020..175862 (+) 843 WP_286498377.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP01_RS00815 (QAP01_00815) - 175855..176349 (+) 495 WP_121289081.1 hypothetical protein -
  QAP01_RS00820 (QAP01_00820) - 176362..176868 (+) 507 WP_286498378.1 helix-turn-helix domain-containing protein -
  QAP01_RS00825 (QAP01_00825) - 176862..177665 (+) 804 WP_286498379.1 phosphatidylserine decarboxylase -
  QAP01_RS00830 (QAP01_00830) nadA 177655..178665 (+) 1011 WP_286498380.1 quinolinate synthase NadA -
  QAP01_RS00835 (QAP01_00835) nadC 178665..179486 (+) 822 WP_286498381.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50293.35 Da        Isoelectric Point: 9.7740

>NTDB_id=817353 QAP01_RS00805 WP_286498376.1 173636..174949(+) (comEC/comE3) [Helicobacter pylori strain BS28-1]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKDLQYRHAQFFGKIKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHSIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANVLGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDHILNMPLIIPTISVYSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817353 QAP01_RS00805 WP_286498376.1 173636..174949(+) (comEC/comE3) [Helicobacter pylori strain BS28-1]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAGACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAATTTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAGGATTTTAAATCGCATT
TGCGCCATTCCATTGACAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGAGCTAATGTGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGTTAGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCCTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCCGTGGGTTTGGGGTCTTTATTAGATCACA
TTTTAAACATGCCTTTAATAATCCCTACGATTTCAGTTTATTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTGAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941