Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP01_RS00010 Genome accession   NZ_CP122950
Coordinates   1598..3037 (+) Length   479 a.a.
NCBI ID   WP_286498255.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS00005 (QAP01_00005) dnaA 1..1368 (+) 1368 WP_286498254.1 chromosomal replication initiator protein DnaA -
  QAP01_RS00010 (QAP01_00010) comH 1598..3037 (+) 1440 WP_286498255.1 competence protein Machinery gene
  QAP01_RS00020 (QAP01_00020) - 3217..3969 (+) 753 WP_079375544.1 exodeoxyribonuclease III -
  QAP01_RS00025 (QAP01_00025) - 3966..4601 (-) 636 WP_000668047.1 outer membrane protein -
  QAP01_RS00030 (QAP01_00030) - 4605..4958 (-) 354 WP_286498256.1 hypothetical protein -
  QAP01_RS00035 (QAP01_00035) recG 5040..6899 (+) 1860 WP_286498257.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54840.85 Da        Isoelectric Point: 6.7661

>NTDB_id=817350 QAP01_RS00010 WP_286498255.1 1598..3037(+) (comH) [Helicobacter pylori strain BS28-1]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHMSTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHLNQMPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
VTPSKISPTNEVKTPTNDTKPPLKHSSEDQENNLFIPPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRLDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817350 QAP01_RS00010 WP_286498255.1 1598..3037(+) (comH) [Helicobacter pylori strain BS28-1]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCCAGACAGGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATGTCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACAACCTTAAACCCCAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCTCAACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGTCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATACCGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAACTTACAAGCCTATCGCCCAAGCATTTTAAAACGCCTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCATGGGAAAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGATGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATATAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.033

100

0.96