Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP00_RS07375 Genome accession   NZ_CP122949
Coordinates   1539064..1539345 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain BS22     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534064..1544345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS07355 (QAP00_07360) - 1534795..1536135 (-) 1341 WP_309257079.1 hypothetical protein -
  QAP00_RS07365 (QAP00_07370) comB4 1536436..1538799 (-) 2364 WP_309256460.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP00_RS07370 (QAP00_07375) comB3 1538801..1539064 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  QAP00_RS07375 (QAP00_07380) comB2 1539064..1539345 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP00_RS07380 (QAP00_07385) - 1539490..1540317 (-) 828 WP_309256461.1 DUF5718 family protein -
  QAP00_RS07385 (QAP00_07390) - 1540409..1541461 (-) 1053 WP_309256462.1 MnmA/TRMU family protein -
  QAP00_RS07390 (QAP00_07395) dnaG 1541458..1543137 (-) 1680 WP_309257080.1 DNA primase -
  QAP00_RS07395 (QAP00_07400) groES 1543404..1543760 (+) 357 WP_309256463.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=817349 QAP00_RS07375 WP_001272686.1 1539064..1539345(-) (comB2) [Helicobacter pylori strain BS22]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817349 QAP00_RS07375 WP_001272686.1 1539064..1539345(-) (comB2) [Helicobacter pylori strain BS22]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989