Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP00_RS07370 Genome accession   NZ_CP122949
Coordinates   1538801..1539064 (-) Length   87 a.a.
NCBI ID   WP_000584970.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533801..1544064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS07355 (QAP00_07360) - 1534795..1536135 (-) 1341 WP_309257079.1 hypothetical protein -
  QAP00_RS07365 (QAP00_07370) comB4 1536436..1538799 (-) 2364 WP_309256460.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP00_RS07370 (QAP00_07375) comB3 1538801..1539064 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  QAP00_RS07375 (QAP00_07380) comB2 1539064..1539345 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP00_RS07380 (QAP00_07385) - 1539490..1540317 (-) 828 WP_309256461.1 DUF5718 family protein -
  QAP00_RS07385 (QAP00_07390) - 1540409..1541461 (-) 1053 WP_309256462.1 MnmA/TRMU family protein -
  QAP00_RS07390 (QAP00_07395) dnaG 1541458..1543137 (-) 1680 WP_309257080.1 DNA primase -
  QAP00_RS07395 (QAP00_07400) groES 1543404..1543760 (+) 357 WP_309256463.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.16 Da        Isoelectric Point: 9.5290

>NTDB_id=817348 QAP00_RS07370 WP_000584970.1 1538801..1539064(-) (comB3) [Helicobacter pylori strain BS22]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817348 QAP00_RS07370 WP_000584970.1 1538801..1539064(-) (comB3) [Helicobacter pylori strain BS22]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977