Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   R0Q54_RS10835 Genome accession   NZ_CP136992
Coordinates   2022506..2022736 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain J46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2017506..2027736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS10805 (R0Q54_10805) ridA 2017670..2018047 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  R0Q54_RS10810 (R0Q54_10810) spoVG 2018242..2018535 (+) 294 WP_003218346.1 septation regulator SpoVG -
  R0Q54_RS10815 (R0Q54_10815) glmU 2018728..2020098 (+) 1371 WP_069963937.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  R0Q54_RS10820 (R0Q54_10820) prsS 2020121..2021074 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  R0Q54_RS10825 (R0Q54_10825) rplYB 2021159..2021773 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  R0Q54_RS10830 (R0Q54_10830) pth 2021880..2022446 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  R0Q54_RS10835 (R0Q54_10835) subA/fin 2022506..2022736 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  R0Q54_RS10840 (R0Q54_10840) mfd 2022806..2026339 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  R0Q54_RS10845 (R0Q54_10845) spoVT 2026475..2027011 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=817348 R0Q54_RS10835 WP_003243417.1 2022506..2022736(+) (subA/fin) [Bacillus subtilis strain J46]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=817348 R0Q54_RS10835 WP_003243417.1 2022506..2022736(+) (subA/fin) [Bacillus subtilis strain J46]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1