Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP00_RS07230 Genome accession   NZ_CP122949
Coordinates   1505907..1507220 (-) Length   437 a.a.
NCBI ID   WP_309256444.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500907..1512220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS07200 (QAP00_07205) nadC 1501370..1502191 (-) 822 WP_000404078.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QAP00_RS07205 (QAP00_07210) nadA 1502191..1503201 (-) 1011 WP_309256440.1 quinolinate synthase NadA -
  QAP00_RS07210 (QAP00_07215) - 1503188..1503994 (-) 807 WP_309256441.1 phosphatidylserine decarboxylase -
  QAP00_RS07215 (QAP00_07220) - 1503988..1504494 (-) 507 WP_309256442.1 helix-turn-helix domain-containing protein -
  QAP00_RS07220 (QAP00_07225) - 1504507..1505001 (-) 495 WP_220951052.1 hypothetical protein -
  QAP00_RS07225 (QAP00_07230) mqnP 1504994..1505827 (-) 834 WP_309257075.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP00_RS07230 (QAP00_07235) comEC/comE3 1505907..1507220 (-) 1314 WP_309256444.1 ComEC/Rec2 family competence protein Machinery gene
  QAP00_RS07235 (QAP00_07240) - 1507217..1508677 (-) 1461 WP_309256445.1 replicative DNA helicase -
  QAP00_RS07240 (QAP00_07245) - 1508688..1510082 (-) 1395 WP_309256446.1 NAD(P)H-hydrate dehydratase -
  QAP00_RS07245 (QAP00_07250) crdS 1510085..1511287 (-) 1203 WP_309257076.1 copper-sensing histidine kinase CrdS -
  QAP00_RS07250 (QAP00_07255) crdR 1511253..1511894 (-) 642 WP_309256447.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50104.11 Da        Isoelectric Point: 9.9597

>NTDB_id=817345 QAP00_RS07230 WP_309256444.1 1505907..1507220(-) (comEC/comE3) [Helicobacter pylori strain BS22]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYRKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKSMI
VYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHAQAFFKSSSFLMRSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLSMPLAIPTISVPSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817345 QAP00_RS07230 WP_309256444.1 1505907..1507220(-) (comEC/comE3) [Helicobacter pylori strain BS22]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCGAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGAGCATGATC
GTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACGCTCAAGCCTTTTTTAAATCCTCTTCTTTTTTGATGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAGCTATCCCTACGATTTCAGTTCCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954