Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP00_RS00010 Genome accession   NZ_CP122949
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_309256513.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS00005 (QAP00_00005) dnaA 1..1368 (+) 1368 WP_309256512.1 chromosomal replication initiator protein DnaA -
  QAP00_RS00010 (QAP00_00010) comH 1597..3036 (+) 1440 WP_309256513.1 competence protein Machinery gene
  QAP00_RS00020 (QAP00_00020) - 3214..3966 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  QAP00_RS00025 (QAP00_00025) - 3963..4598 (-) 636 WP_000668050.1 outer membrane protein -
  QAP00_RS00030 (QAP00_00030) - 4602..4946 (-) 345 WP_309256514.1 hypothetical protein -
  QAP00_RS00035 (QAP00_00035) recG 5028..6899 (+) 1872 WP_309256515.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54860.95 Da        Isoelectric Point: 7.0430

>NTDB_id=817330 QAP00_RS00010 WP_309256513.1 1597..3036(+) (comH) [Helicobacter pylori strain BS22]
MKKTLCLSFFLTFSNPLQALMIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIIFSSKELKESHPHQILSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
ATPSKTSPTNEVKTPTNDAKPPLKHSSEDQENNLFIAPPTEKTLPNNTLNADISENNESNENKDSVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYQITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817330 QAP00_RS00010 WP_309256513.1 1597..3036(+) (comH) [Helicobacter pylori strain BS22]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTATGATCGAGCTTTTAGAAGA
AATCAAAACCTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAAACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACCGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTATTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCCCACCAAATACTTTCTTTAAACGCACCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTCCTCAAAATTTTTCTTACCCAGAGCCAAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAACTCCTAGCAAAACAAGCCCCACTAATGAAGTTAAAACGCCAACAAACGATGCTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTCATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCTTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAAGATAGTGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCTAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTATTTATGAGCGCCCCAAACAAGACGATC
AGATAGAACCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.572

100

0.946