Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP02_RS00775 Genome accession   NZ_CP122948
Coordinates   162140..163453 (+) Length   437 a.a.
NCBI ID   WP_286464178.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 157140..168453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS00755 (QAP02_00755) crdR 157460..158101 (+) 642 WP_286464171.1 copper response regulator transcription factor CrdR -
  QAP02_RS00760 (QAP02_00760) crdS 158067..159269 (+) 1203 WP_140500013.1 copper-sensing histidine kinase CrdS -
  QAP02_RS00765 (QAP02_00765) - 159272..160666 (+) 1395 WP_286464174.1 NAD(P)H-hydrate dehydratase -
  QAP02_RS00770 (QAP02_00770) - 160677..162143 (+) 1467 WP_140528904.1 replicative DNA helicase -
  QAP02_RS00775 (QAP02_00775) comEC/comE3 162140..163453 (+) 1314 WP_286464178.1 ComEC/Rec2 family competence protein Machinery gene
  QAP02_RS00780 (QAP02_00780) mqnP 163524..164366 (+) 843 WP_238699875.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP02_RS00785 (QAP02_00785) - 164359..164853 (+) 495 WP_286464180.1 hypothetical protein -
  QAP02_RS00790 (QAP02_00790) - 164866..165372 (+) 507 WP_000953088.1 hypothetical protein -
  QAP02_RS00795 (QAP02_00795) - 165366..166169 (+) 804 WP_286464181.1 phosphatidylserine decarboxylase -
  QAP02_RS00800 (QAP02_00800) nadA 166159..167169 (+) 1011 WP_140490887.1 quinolinate synthase NadA -
  QAP02_RS00805 (QAP02_00805) nadC 167169..167990 (+) 822 WP_286464182.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50159.17 Da        Isoelectric Point: 9.9068

>NTDB_id=817312 QAP02_RS00775 WP_286464178.1 162140..163453(+) (comEC/comE3) [Helicobacter pylori strain BS21]
MKDKTFQGAFELLTTPKEYLLCGVFLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817312 QAP02_RS00775 WP_286464178.1 162140..163453(+) (comEC/comE3) [Helicobacter pylori strain BS21]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTGTTTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAACCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTGAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947