Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R0Q54_RS04195 Genome accession   NZ_CP136992
Coordinates   753213..753923 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain J46     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 748213..758923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS04175 (R0Q54_04175) cysK 748263..749198 (+) 936 WP_033880436.1 cysteine synthase A -
  R0Q54_RS04180 (R0Q54_04180) pepV 749232..750623 (-) 1392 WP_014477689.1 dipeptidase PepV -
  R0Q54_RS04185 (R0Q54_04185) pbuO 750720..752018 (+) 1299 WP_069964255.1 hypoxanthine/guanine permease PbuO -
  R0Q54_RS04190 (R0Q54_04190) ythQ 752059..753216 (-) 1158 WP_069964256.1 ABC transporter permease -
  R0Q54_RS04195 (R0Q54_04195) pptA 753213..753923 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  R0Q54_RS04200 (R0Q54_04200) ytzE 754213..754434 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  R0Q54_RS04205 (R0Q54_04205) rsuA 754556..755275 (-) 720 WP_017695479.1 pseudouridine synthase -
  R0Q54_RS04210 (R0Q54_04210) murJ 755344..756978 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  R0Q54_RS04215 (R0Q54_04215) ytfP 757181..758443 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=817311 R0Q54_RS04195 WP_015714539.1 753213..753923(-) (pptA) [Bacillus subtilis strain J46]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=817311 R0Q54_RS04195 WP_015714539.1 753213..753923(-) (pptA) [Bacillus subtilis strain J46]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432